Os08g0491000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, uncharacterized transcript.
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Os08g0491000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, uncharacterized transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 157.05 | 0.589 | 4.12 | 2.91 | 0.249 | -1.43 | 1.45 | 2.4 | 0.555 | 15.2 | 22.11 | 4334 | -- | -- |
| 160.87 | 0.591 | 4.21 | 2.21 | 0.276 | -1.29 | 1.39 | -- | 0.391 | 15.1 | 21.78 | 4456 | -- | -- |
| 163.79 | 0.596 | 4.12 | 2.92 | 0.274 | -1.44 | -- | 2.37 | 0.556 | 15.4 | 22.2 | 4452 | -- | -- |
| 167.11 | 0.602 | 4.2 | 2.24 | 0.265 | -1.3 | -- | -- | 0.379 | 15.5 | 22.3 | 4319 | -- | -- |
| 167 | 0.602 | 4.13 | 2.86 | -- | -1.49 | -- | 2.29 | 0.516 | -- | 22.67 | 4182 | -- | -- |
| 209.79 | 0.679 | 4.26 | 1.7 | 0.332 | -- | 1.48 | -- | 0.147 | 15 | -- | -- | -- | -- |
| 216.98 | 0.69 | 4.26 | 1.73 | 0.342 | -- | -- | -- | 0.156 | 15.4 | -- | -- | -- | -- |
| 169.87 | 0.607 | 4.21 | 2.22 | -- | -1.32 | -- | -- | 0.349 | -- | 22.63 | 4115 | -- | -- |
| 274.71 | 0.772 | 4.32 | -- | 0.241 | -0.694 | -- | -- | -0.135 | 16.2 | 28.62 | 2717 | -- | -- |
| 223.57 | 0.699 | 4.26 | 1.71 | -- | -- | -- | -- | 0.147 | -- | -- | -- | -- | -- |
| 295.78 | 0.805 | 4.3 | -- | 0.308 | -- | -- | -- | -0.0367 | 15.4 | -- | -- | -- | -- |
| 277.74 | 0.776 | 4.32 | -- | -- | -0.722 | -- | -- | -0.137 | -- | 28.51 | 2717 | -- | -- |
| 301.12 | 0.81 | 4.3 | -- | -- | -- | -- | -- | -0.0434 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 149.23 | radiation | 1 | 4320 | < th | dose independent | rect. | 18 | 11 |
| 2 | 149.23 | radiation | 1 | 4320 | > th | dose dependent | rect. | 18 | 1 |
| 13 | 149.63 | radiation | 1 | 4320 | < th | dose independent | rect. | 18 | 2 |
| 18 | 149.78 | radiation | 1 | 4320 | < th | dose independent | rect. | 18 | 7 |
| 23 | 150.12 | radiation | 1 | 4320 | > th | dose independent | rect. | 18 | 11 |
| 24 | 150.48 | radiation | 1 | 4320 | > th | dose independent | rect. | 18 | 1 |
| 44 | 153.37 | radiation | 20 | 4320 | < th | dose independent | rect. | 16 | 16 |
| 45 | 153.52 | wind | 3 | 43200 | > th | dose dependent | rect. | 4 | 12 |
| 48 | 153.81 | temperature | 20 | 4320 | > th | dose dependent | rect. | 13 | 5 |
| 49 | 153.82 | temperature | 20 | 4320 | > th | dose dependent | rect. | 9 | 9 |
| 54 | 153.91 | temperature | 20 | 4320 | > th | dose dependent | rect. | 16 | 1 |
| 57 | 153.94 | wind | 3 | 43200 | > th | dose dependent | sin | 2 | NA |
| 61 | 153.95 | temperature | 10 | 4320 | > th | dose dependent | rect. | 9 | 9 |
| 70 | 154.01 | wind | 5 | 43200 | < th | dose independent | rect. | 5 | 11 |
| 71 | 154.01 | temperature | 10 | 4320 | > th | dose dependent | rect. | 13 | 5 |
| 75 | 154.05 | temperature | 10 | 4320 | > th | dose dependent | rect. | 16 | 1 |
| 111 | 154.22 | wind | 5 | 43200 | > th | dose independent | rect. | 5 | 11 |
| 124 | 154.28 | wind | 5 | 43200 | < th | dose independent | sin | 1 | NA |
| 167 | 154.44 | wind | 5 | 43200 | < th | dose independent | rect. | 2 | 20 |
| 175 | 154.48 | wind | 5 | 43200 | > th | dose independent | sin | 1 | NA |
| 206 | 154.59 | wind | 5 | 43200 | > th | dose independent | rect. | 3 | 19 |
| 218 | 154.61 | wind | 9 | 43200 | < th | dose dependent | rect. | 3 | 12 |
| 221 | 154.63 | wind | 5 | 43200 | > th | dose independent | rect. | 24 | 21 |
| 296 | 154.79 | wind | 3 | 43200 | > th | dose dependent | rect. | 18 | 22 |
| 332 | 154.86 | radiation | 10 | 4320 | < th | dose dependent | rect. | 18 | 11 |
| 345 | 154.89 | wind | 5 | 43200 | < th | dose independent | rect. | 17 | 23 |
| 346 | 154.89 | temperature | 10 | 4320 | > th | dose dependent | rect. | 9 | 2 |
| 373 | 154.94 | temperature | 20 | 4320 | > th | dose dependent | sin | 22 | NA |
| 400 | 154.99 | wind | 5 | 43200 | < th | dose independent | no | NA | NA |
| 422 | 155.03 | wind | 5 | 43200 | < th | dose independent | rect. | 20 | 23 |
| 426 | 155.03 | wind | 3 | 43200 | > th | dose dependent | rect. | 20 | 21 |
| 427 | 155.03 | wind | 3 | 43200 | > th | dose dependent | rect. | 24 | 22 |
| 456 | 155.09 | wind | 7 | 43200 | < th | dose dependent | rect. | 7 | 7 |
| 461 | 155.10 | radiation | 10 | 4320 | < th | dose dependent | rect. | 18 | 2 |
| 488 | 155.14 | wind | 5 | 43200 | > th | dose independent | rect. | 17 | 23 |
| 499 | 155.16 | wind | 5 | 43200 | < th | dose independent | rect. | 9 | 23 |
| 503 | 155.17 | wind | 5 | 43200 | < th | dose independent | rect. | 13 | 23 |
| 517 | 155.20 | wind | 5 | 43200 | > th | dose independent | no | NA | NA |
| 527 | 155.21 | wind | 5 | 43200 | < th | dose independent | rect. | 15 | 23 |
| 548 | 155.25 | temperature | 10 | 4320 | > th | dose dependent | sin | 22 | NA |
| 576 | 155.28 | wind | 5 | 43200 | > th | dose independent | rect. | 9 | 23 |
| 614 | 155.36 | wind | 5 | 43200 | > th | dose independent | rect. | 13 | 23 |
| 661 | 155.47 | wind | 9 | 43200 | < th | dose dependent | sin | 3 | NA |
| 675 | 155.49 | wind | 3 | 43200 | > th | dose dependent | no | NA | NA |
| 775 | 155.67 | wind | 3 | 43200 | > th | dose dependent | rect. | 7 | 23 |
| 798 | 155.73 | wind | 3 | 43200 | > th | dose dependent | rect. | 10 | 23 |
| 867 | 155.87 | temperature | 30 | 4320 | < th | dose dependent | rect. | 9 | 1 |
| 904 | 155.99 | radiation | 30 | 4320 | < th | dose independent | rect. | 15 | 18 |
| 967 | 156.15 | wind | 9 | 43200 | < th | dose dependent | rect. | 20 | 19 |
| 985 | 156.19 | radiation | 10 | 4320 | < th | dose dependent | rect. | 18 | 7 |