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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0489800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Phosphatidylinositol 3- and 4-kinase, catalytic domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.99 (0.0184) R2 : 0.00939
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0805 (0.0387) R2dN8 : 0.0121 R2N8 : 0.00939
σ : 0.346
deviance : 55.09
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
52.8 0.341 2.97 0.127 0.284 0.301 -0.394 -0.688 0.113 12.7 0.04994 154 -- --
53.46 0.341 3 0.138 0.322 0.316 0.26 -- 0.0846 12.5 0.05998 153 -- --
52.87 0.339 2.98 0.106 0.304 0.314 -- -0.366 0.113 12.8 0.05001 153 -- --
53.64 0.341 2.98 0.103 0.312 0.32 -- -- 0.108 12.9 0.01997 153 -- --
53.62 0.341 2.98 0.0799 -- 0.0815 -- -0.367 0.0931 -- 0.5026 181 -- --
54.25 0.345 2.99 0.0555 0.0606 -- -0.336 -- 0.0854 0.891 -- -- -- --
54.7 0.346 2.99 0.0673 0.0653 -- -- -- 0.0868 2.1 -- -- -- --
54.29 0.343 2.99 0.0752 -- 0.0825 -- -- 0.0957 -- 0.0004487 153 -- --
53.91 0.342 2.98 -- 0.316 0.324 -- -- 0.1 12.9 0.05003 153 -- --
54.96 0.346 2.99 0.0701 -- -- -- -- 0.0883 -- -- -- -- --
54.82 0.346 2.99 -- 0.0666 -- -- -- 0.0793 2.13 -- -- -- --
54.44 0.344 2.99 -- -- 0.0824 -- -- 0.084 -- 0.04998 147 -- --
55.09 0.346 2.99 -- -- -- -- -- 0.0805 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 47.73 temperature 25.0 30 > th dose independent rect. 20 3
3 48.00 temperature 25.0 90 > th dose dependent rect. 20 3
12 48.68 atmosphere 1005.0 30 > th dose dependent rect. 20 3
22 49.44 wind 9.0 4320 < th dose independent rect. 23 1
24 49.44 temperature 25.0 30 > th dose dependent rect. 22 1
26 49.45 temperature 10.0 1440 > th dose independent rect. 23 1
29 49.45 temperature 30.0 1440 < th dose independent rect. 23 1
33 49.45 humidity 50.0 1440 > th dose independent rect. 23 1
43 49.45 atmosphere 995.0 1440 > th dose independent rect. 23 1
44 49.45 radiation 1.0 1440 < th dose independent rect. 23 1
64 49.45 temperature 10.0 1440 > th dose independent rect. 24 23
67 49.45 radiation 1.0 1440 < th dose dependent rect. 23 1
72 49.47 temperature 25.0 30 > th dose independent rect. 22 1
73 49.47 humidity 90.0 30 < th dose independent rect. 22 1
74 49.47 atmosphere 1005.0 30 > th dose independent rect. 22 1
75 49.47 humidity 90.0 30 < th dose dependent rect. 22 1
76 49.47 atmosphere 1005.0 30 > th dose dependent rect. 22 1
84 49.51 wind 1.0 30 > th dose independent rect. 22 1
86 49.51 precipitation 0.1 30 < th dose independent rect. 22 1
87 49.51 precipitation 0.1 30 < th dose dependent rect. 22 1
88 49.52 wind 3.0 30 < th dose independent rect. 22 1
92 49.52 temperature 10.0 30 > th dose independent rect. 22 1
94 49.52 temperature 30.0 30 < th dose independent rect. 22 1
95 49.52 humidity 50.0 30 > th dose independent rect. 22 1
99 49.52 atmosphere 1010.0 30 < th dose independent rect. 22 1
101 49.52 radiation 1.0 30 < th dose independent rect. 22 1
106 49.52 temperature 10.0 30 > th dose independent rect. 23 23
107 49.52 wind 7.0 30 < th dose dependent rect. 22 1
109 49.52 radiation 1.0 30 < th dose dependent rect. 22 1
117 49.54 humidity 50.0 30 > th dose dependent rect. 22 1
119 49.55 wind 9.0 30 < th dose independent rect. 23 23
120 49.55 wind 1.0 30 > th dose dependent rect. 22 1
129 49.61 atmosphere 1015.0 30 < th dose dependent rect. 22 1
130 49.62 temperature 30.0 30 < th dose dependent rect. 22 1
144 49.72 temperature 25.0 10 > th dose dependent rect. 20 9
181 49.82 temperature 25.0 90 > th dose dependent rect. 20 9
186 49.83 radiation 20.0 4320 < th dose dependent rect. 21 1
203 49.88 humidity 90.0 30 < th dose independent rect. 20 1
208 49.91 atmosphere 1005.0 30 > th dose independent rect. 20 1
211 49.91 temperature 10.0 30 > th dose dependent rect. 20 1
213 49.91 atmosphere 995.0 30 > th dose dependent rect. 20 1
219 49.92 temperature 10.0 1440 > th dose independent rect. 21 1
222 49.92 temperature 30.0 1440 < th dose independent rect. 21 1
226 49.92 humidity 50.0 1440 > th dose independent rect. 21 1
232 49.92 atmosphere 995.0 1440 > th dose independent rect. 21 1
233 49.92 radiation 1.0 1440 < th dose independent rect. 21 1
253 49.92 temperature 10.0 1440 > th dose independent rect. 22 23
258 49.93 wind 1.0 30 > th dose independent rect. 20 1
259 49.93 wind 5.0 30 < th dose independent rect. 20 1
262 49.93 temperature 10.0 30 > th dose independent rect. 20 1
265 49.93 temperature 30.0 30 < th dose independent rect. 20 1
266 49.93 humidity 50.0 30 > th dose independent rect. 20 1
269 49.93 atmosphere 995.0 30 > th dose independent rect. 20 1
271 49.93 atmosphere 1010.0 30 < th dose independent rect. 20 1
273 49.93 radiation 1.0 30 < th dose independent rect. 20 1
278 49.93 precipitation 0.1 30 < th dose independent rect. 20 1
279 49.93 temperature 10.0 30 > th dose independent rect. 21 23
281 49.93 radiation 1.0 30 < th dose dependent rect. 20 1
287 49.93 precipitation 0.1 30 < th dose dependent rect. 20 1
291 49.95 wind 9.0 30 < th dose dependent rect. 20 1
295 49.96 wind 1.0 30 > th dose dependent rect. 20 1
297 49.96 humidity 50.0 30 > th dose dependent rect. 20 1
298 49.96 humidity 90.0 30 < th dose dependent rect. 20 1
307 50.02 atmosphere 1015.0 30 < th dose dependent rect. 20 1
315 50.07 temperature 25.0 30 > th dose independent rect. 20 9
322 50.09 wind 9.0 30 < th dose independent rect. 21 23
340 50.21 temperature 30.0 30 < th dose dependent rect. 20 1
353 50.34 humidity 80.0 30 > th dose independent rect. 20 3
355 50.36 atmosphere 1005.0 30 > th dose independent rect. 20 3
396 50.44 atmosphere 995.0 30 > th dose independent rect. 23 23
426 50.62 humidity 90.0 30 < th dose independent rect. 20 3
429 50.63 precipitation 0.1 30 < th dose independent rect. 23 23
430 50.63 precipitation 0.1 30 < th dose dependent rect. 23 23
455 50.83 wind 5.0 30 < th dose independent rect. 20 3
486 51.02 wind 7.0 30 < th dose dependent rect. 20 3
493 51.06 precipitation 0.1 1440 < th dose independent rect. 23 1
497 51.06 precipitation 0.1 1440 < th dose dependent rect. 23 1
506 51.12 atmosphere 1005.0 270 > th dose independent rect. 19 1
509 51.13 atmosphere 1000.0 270 > th dose dependent rect. 19 1
513 51.13 temperature 10.0 30 > th dose dependent rect. 23 21
519 51.16 precipitation 0.1 30 < th dose independent rect. 21 23
522 51.16 precipitation 0.1 30 < th dose dependent rect. 21 23
551 51.28 wind 9.0 30 < th dose independent rect. 23 21
552 51.28 atmosphere 995.0 30 > th dose independent rect. 21 23
572 51.34 wind 1.0 30 > th dose independent rect. 20 3
577 51.35 temperature 15.0 90 > th dose independent rect. 23 20
578 51.35 atmosphere 995.0 30 > th dose independent rect. 23 21
583 51.37 radiation 1.0 1440 < th dose dependent rect. 21 3
586 51.38 temperature 10.0 1440 > th dose independent rect. 21 3
589 51.38 temperature 30.0 1440 < th dose independent rect. 21 3
593 51.38 humidity 50.0 1440 > th dose independent rect. 21 3
599 51.38 atmosphere 995.0 1440 > th dose independent rect. 21 3
600 51.38 radiation 1.0 1440 < th dose independent rect. 21 3
621 51.38 temperature 10.0 1440 > th dose independent rect. 24 21
633 51.38 radiation 10.0 43200 < th dose dependent rect. 21 3
645 51.40 humidity 50.0 30 > th dose independent rect. 23 23
662 51.45 temperature 10.0 30 > th dose independent rect. 20 3
664 51.45 temperature 30.0 30 < th dose independent rect. 20 3
665 51.45 humidity 50.0 30 > th dose independent rect. 20 3
669 51.45 atmosphere 1010.0 30 < th dose independent rect. 20 3
671 51.45 radiation 1.0 30 < th dose independent rect. 20 3
676 51.45 precipitation 0.1 30 < th dose independent rect. 20 3
678 51.45 radiation 1.0 30 < th dose dependent rect. 20 3
683 51.45 precipitation 0.1 30 < th dose dependent rect. 20 3
707 51.53 precipitation 0.1 30 < th dose independent rect. 23 21
712 51.53 precipitation 0.1 30 < th dose dependent rect. 23 21
754 51.58 precipitation 0.1 1440 < th dose independent rect. 21 3
756 51.58 precipitation 0.1 1440 < th dose dependent rect. 21 3
781 51.60 humidity 50.0 30 > th dose dependent rect. 20 3
789 51.61 humidity 50.0 90 > th dose independent rect. 23 20
800 51.63 wind 5.0 270 < th dose independent rect. 19 1
812 51.64 radiation 40.0 90 < th dose dependent rect. 23 11
813 51.65 wind 1.0 90 > th dose independent rect. 9 14
814 51.65 precipitation 0.1 90 < th dose independent rect. 9 14
819 51.65 precipitation 0.1 90 < th dose dependent rect. 9 14
823 51.66 atmosphere 1015.0 90 < th dose independent rect. 9 14
840 51.67 radiation 20.0 90 < th dose independent rect. 23 10
856 51.69 humidity 70.0 90 > th dose independent rect. 23 10
857 51.69 atmosphere 1000.0 90 > th dose independent rect. 23 10
864 51.71 wind 9.0 90 < th dose independent rect. 23 10
865 51.71 temperature 10.0 90 > th dose independent rect. 23 10
867 51.71 humidity 50.0 90 > th dose independent rect. 23 10
869 51.71 temperature 10.0 90 > th dose independent rect. 9 14
902 51.78 precipitation 0.1 90 < th dose independent rect. 23 10
906 51.78 precipitation 0.1 90 < th dose dependent rect. 23 10
910 51.79 temperature 30.0 90 < th dose independent rect. 23 10
915 51.80 temperature 25.0 720 > th dose dependent rect. 6 2
928 51.83 humidity 50.0 90 > th dose dependent rect. 23 11
938 51.85 atmosphere 1015.0 30 < th dose independent rect. 23 23
957 51.88 radiation 10.0 10 < th dose independent rect. 23 21
966 51.90 precipitation 0.1 720 < th dose independent rect. 23 10
972 51.90 precipitation 0.1 720 < th dose dependent rect. 23 10
973 51.90 temperature 10.0 90 > th dose dependent rect. 5 14
977 51.91 temperature 25.0 720 > th dose dependent rect. 24 9
981 51.92 precipitation 0.1 720 < th dose independent rect. 21 14
982 51.92 wind 9.0 270 < th dose independent rect. 21 22
986 51.92 precipitation 0.1 720 < th dose dependent rect. 21 14
991 51.93 temperature 10.0 10 > th dose dependent rect. 6 14