Os08g0486500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os08g0486500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 64.78 | 0.378 | 2.84 | 0.0632 | 0.0803 | -0.202 | 0.376 | -0.0996 | 0.0516 | 1 | 1010 | 10 | -- | -- |
| 64.81 | 0.378 | 2.84 | 0.0694 | 0.0811 | -0.199 | 0.361 | -- | 0.0526 | 1.1 | 1010 | 9 | -- | -- |
| 65.16 | 0.379 | 2.84 | 0.0513 | 0.103 | -0.188 | -- | -0.0497 | 0.049 | 3.49 | 1010 | 10 | -- | -- |
| 65.17 | 0.378 | 2.84 | 0.0548 | 0.102 | -0.187 | -- | -- | 0.0495 | 3.49 | 1010 | 10 | -- | -- |
| 65.75 | 0.38 | 2.84 | 0.0565 | -- | -0.189 | -- | -0.0375 | 0.0519 | -- | 1010 | 10 | -- | -- |
| 66.01 | 0.381 | 2.84 | 0.0596 | 0.076 | -- | 0.34 | -- | 0.0529 | 1.43 | -- | -- | -- | -- |
| 66.21 | 0.381 | 2.84 | 0.0468 | 0.108 | -- | -- | -- | 0.0498 | 4.21 | -- | -- | -- | -- |
| 65.75 | 0.379 | 2.84 | 0.0592 | -- | -0.188 | -- | -- | 0.0522 | -- | 1010 | 10 | -- | -- |
| 65.25 | 0.378 | 2.84 | -- | 0.103 | -0.185 | -- | -- | 0.0434 | 3.5 | 1010 | 7 | -- | -- |
| 66.84 | 0.382 | 2.84 | 0.0511 | -- | -- | -- | -- | 0.0526 | -- | -- | -- | -- | -- |
| 66.27 | 0.381 | 2.84 | -- | 0.108 | -- | -- | -- | 0.0446 | 4.2 | -- | -- | -- | -- |
| 65.85 | 0.379 | 2.84 | -- | -- | -0.186 | -- | -- | 0.0457 | -- | 1010 | 10 | -- | -- |
| 66.9 | 0.382 | 2.84 | -- | -- | -- | -- | -- | 0.047 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 61.90 | radiation | 10 | 10 | > th | dose independent | rect. | 6 | 1 |
| 27 | 61.90 | radiation | 10 | 10 | > th | dose dependent | rect. | 6 | 1 |
| 57 | 62.25 | temperature | 25 | 90 | > th | dose dependent | rect. | 22 | 1 |
| 58 | 62.36 | wind | 1 | 10 | < th | dose independent | rect. | 6 | 4 |
| 71 | 62.52 | temperature | 30 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 86 | 62.90 | wind | 1 | 10 | < th | dose dependent | rect. | 6 | 18 |
| 87 | 62.93 | atmosphere | 1005 | 10 | > th | dose independent | rect. | 23 | 1 |
| 94 | 63.02 | wind | 1 | 10 | < th | dose dependent | rect. | 9 | 15 |
| 103 | 63.24 | temperature | 25 | 270 | > th | dose dependent | rect. | 20 | 3 |
| 104 | 63.27 | wind | 1 | 10 | < th | dose dependent | rect. | 6 | 4 |
| 107 | 63.28 | humidity | 50 | 720 | < th | dose independent | rect. | 16 | 1 |
| 113 | 63.33 | humidity | 50 | 720 | < th | dose dependent | rect. | 16 | 1 |
| 127 | 63.39 | atmosphere | 1005 | 270 | > th | dose independent | rect. | 19 | 5 |
| 128 | 63.40 | atmosphere | 1005 | 270 | > th | dose independent | rect. | 20 | 1 |
| 130 | 63.45 | wind | 3 | 10 | < th | dose dependent | rect. | 6 | 1 |
| 131 | 63.45 | humidity | 90 | 270 | < th | dose dependent | rect. | 20 | 1 |
| 137 | 63.52 | humidity | 60 | 4320 | < th | dose independent | rect. | 8 | 1 |
| 151 | 63.52 | humidity | 60 | 4320 | < th | dose dependent | rect. | 8 | 1 |
| 165 | 63.53 | radiation | 20 | 10 | > th | dose dependent | rect. | 9 | 1 |
| 167 | 63.54 | humidity | 90 | 270 | < th | dose independent | rect. | 20 | 1 |
| 181 | 63.55 | humidity | 60 | 90 | < th | dose independent | rect. | 18 | 15 |
| 182 | 63.55 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 6 | 1 |
| 183 | 63.55 | humidity | 60 | 90 | < th | dose dependent | rect. | 18 | 15 |
| 189 | 63.57 | humidity | 60 | 90 | < th | dose dependent | rect. | 9 | 1 |
| 190 | 63.57 | wind | 1 | 10 | < th | dose dependent | rect. | 8 | 2 |
| 219 | 63.57 | humidity | 60 | 10 | < th | dose dependent | rect. | 18 | 16 |
| 229 | 63.58 | humidity | 60 | 270 | < th | dose independent | rect. | 8 | 1 |
| 231 | 63.58 | humidity | 60 | 30 | < th | dose independent | rect. | 9 | 1 |
| 307 | 63.58 | humidity | 60 | 10 | < th | dose dependent | rect. | 9 | 1 |
| 401 | 63.59 | wind | 1 | 10 | < th | dose independent | rect. | 9 | 1 |
| 509 | 63.61 | wind | 3 | 10 | < th | dose dependent | rect. | 22 | 2 |
| 556 | 63.67 | humidity | 60 | 1440 | > th | dose independent | rect. | 8 | 1 |
| 564 | 63.68 | radiation | 40 | 30 | > th | dose dependent | rect. | 9 | 1 |
| 615 | 63.71 | atmosphere | 1000 | 30 | > th | dose dependent | rect. | 22 | 2 |
| 636 | 63.72 | humidity | 70 | 1440 | > th | dose independent | rect. | 1 | 6 |
| 640 | 63.73 | humidity | 60 | 1440 | > th | dose independent | rect. | 22 | 11 |
| 664 | 63.74 | humidity | 60 | 10 | > th | dose independent | sin | 10 | NA |
| 667 | 63.74 | humidity | 60 | 1440 | > th | dose independent | rect. | 24 | 9 |
| 668 | 63.74 | humidity | 80 | 30 | > th | dose dependent | rect. | 6 | 1 |
| 673 | 63.75 | humidity | 60 | 1440 | > th | dose independent | rect. | 20 | 13 |
| 690 | 63.76 | wind | 1 | 10 | < th | dose independent | rect. | 6 | 1 |
| 741 | 63.79 | wind | 1 | 10 | < th | dose independent | rect. | 23 | 1 |
| 768 | 63.82 | radiation | 10 | 30 | > th | dose independent | sin | 9 | NA |
| 778 | 63.82 | humidity | 90 | 270 | < th | dose dependent | rect. | 20 | 3 |
| 779 | 63.83 | temperature | 20 | 10 | < th | dose independent | rect. | 23 | 1 |
| 843 | 63.85 | humidity | 60 | 1440 | > th | dose independent | rect. | 4 | 5 |
| 853 | 63.87 | radiation | 40 | 10 | > th | dose dependent | sin | 12 | NA |
| 856 | 63.87 | radiation | 10 | 10 | < th | dose dependent | rect. | 6 | 1 |
| 864 | 63.88 | atmosphere | 1000 | 30 | > th | dose dependent | rect. | 20 | 4 |
| 889 | 63.89 | wind | 1 | 30 | < th | dose dependent | rect. | 23 | 5 |
| 963 | 63.91 | wind | 1 | 10 | < th | dose independent | rect. | 4 | 6 |
| 992 | 63.93 | temperature | 30 | 30 | < th | dose dependent | rect. | 6 | 1 |