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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0486000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.46 (0.0463) R2 : 0.194
β1 : -0.927 (0.179) R2dD : 0.0571 R2D : -0.0125
β2 : 0.872 (0.114) R2dC : 0.106 R2C : 0.0974
β3 : 0.863 (0.165) R2dE : 0.0537 R2E : -0.00941
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.452 (0.101) R2dN8 : 0.0515 R2N8 : 0.00886
σ : 0.858
deviance : 339.7
__
_____
C
peak time of C : 20.8
E
wheather : temperature
threshold : 26.5
memory length : 4449
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
326.25 0.849 3.46 -0.98 0.875 0.859 -2.05 0.101 -0.478 20.6 26.3 4450 -- --
326.26 0.841 3.46 -1 0.87 0.871 -2.05 -- -0.483 20.6 26.3 4452 -- --
339.73 0.858 3.46 -0.891 0.866 0.853 -- 0.195 -0.466 20.8 26.4 4438 -- --
339.7 0.858 3.46 -0.927 0.872 0.863 -- -- -0.452 20.8 26.5 4449 -- --
372.75 0.899 3.47 -1.03 -- 0.944 -- -0.316 -0.61 -- 26.2 2063 -- --
346.01 0.872 3.43 -0.683 0.889 -- -2.02 -- -0.343 20.7 -- -- -- --
359.23 0.888 3.43 -0.619 0.891 -- -- -- -0.344 21 -- -- -- --
362.39 0.887 3.44 -0.888 -- 1.15 -- -- -0.483 -- 28.2 815 -- --
360.07 0.884 3.43 -- 0.885 0.534 -- -- -0.305 20.8 26.9 4425 -- --
404.81 0.94 3.41 -0.618 -- -- -- -- -0.349 -- -- -- -- --
369.33 0.899 3.42 -- 0.892 -- -- -- -0.275 21 -- -- -- --
381.23 0.909 3.41 -- -- 1.06 -- -- -0.347 -- 28.59 732 -- --
414.88 0.951 3.39 -- -- -- -- -- -0.281 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 318.26 temperature 10.0 270 > th dose dependent rect. 14 10
2 318.59 temperature 20.0 90 > th dose dependent rect. 16 19
3 318.76 temperature 10.0 270 > th dose dependent rect. 13 22
11 319.71 temperature 20.0 270 > th dose dependent rect. 14 20
15 320.18 atmosphere 1015.0 10 < th dose dependent rect. 16 8
16 320.20 atmosphere 1010.0 90 < th dose dependent rect. 16 7
20 320.73 temperature 15.0 90 > th dose dependent rect. 16 10
21 320.75 atmosphere 1015.0 90 < th dose dependent rect. 16 9
25 320.96 atmosphere 1015.0 270 < th dose dependent rect. 14 9
27 320.99 temperature 15.0 90 > th dose dependent rect. 16 8
41 322.07 temperature 15.0 10 > th dose dependent rect. 16 11
60 322.63 temperature 30.0 90 > th dose independent rect. 16 20
61 322.64 atmosphere 1015.0 10 < th dose dependent rect. 16 10
66 322.90 radiation 20.0 720 > th dose dependent rect. 16 1
80 322.95 atmosphere 1015.0 90 < th dose dependent rect. 16 19
95 323.24 temperature 30.0 720 < th dose independent rect. 20 22
99 323.32 temperature 30.0 270 < th dose independent rect. 9 6
106 323.59 temperature 20.0 720 > th dose dependent rect. 14 3
109 323.67 atmosphere 1010.0 30 < th dose dependent rect. 16 4
113 323.70 temperature 25.0 4320 > th dose independent rect. 19 1
124 323.83 temperature 25.0 4320 > th dose independent rect. 19 3
135 324.05 temperature 30.0 270 < th dose independent rect. 8 8
142 324.19 temperature 30.0 270 < th dose independent rect. 9 19
148 324.26 temperature 25.0 4320 < th dose independent rect. 19 3
165 324.37 atmosphere 1015.0 90 < th dose dependent rect. 16 17
166 324.38 temperature 25.0 4320 < th dose independent rect. 19 1
178 324.59 atmosphere 1005.0 90 < th dose independent rect. 16 4
181 324.62 atmosphere 1005.0 720 < th dose independent rect. 16 1
189 324.68 temperature 25.0 720 < th dose independent rect. 2 19
191 324.71 temperature 30.0 270 < th dose dependent rect. 9 19
209 324.88 temperature 30.0 720 < th dose dependent rect. 8 10
216 324.93 temperature 30.0 720 < th dose dependent rect. 7 12
245 325.18 atmosphere 1000.0 270 > th dose independent rect. 18 10
248 325.22 temperature 30.0 720 < th dose independent rect. 21 16
262 325.30 temperature 30.0 270 < th dose dependent rect. 9 12
305 325.55 atmosphere 1005.0 90 < th dose independent rect. 16 16
323 325.67 temperature 10.0 720 > th dose dependent rect. 11 7
359 325.91 temperature 30.0 720 < th dose dependent sin 23 NA
363 325.92 temperature 30.0 720 < th dose independent rect. 6 17
382 326.02 temperature 10.0 720 > th dose dependent rect. 6 18
387 326.05 temperature 10.0 270 > th dose dependent sin 17 NA
392 326.08 atmosphere 1015.0 90 < th dose independent rect. 16 19
394 326.09 wind 1.0 10 < th dose dependent rect. 2 1
425 326.26 atmosphere 1005.0 720 < th dose independent rect. 14 4
426 326.27 temperature 10.0 270 > th dose dependent rect. 4 16
441 326.36 temperature 30.0 4320 < th dose dependent rect. 16 2
463 326.45 temperature 30.0 270 < th dose independent rect. 23 15
467 326.46 atmosphere 1015.0 270 < th dose dependent rect. 14 19
472 326.48 humidity 50.0 90 > th dose independent rect. 11 5
482 326.51 temperature 30.0 270 < th dose dependent sin 20 NA
489 326.55 temperature 30.0 30 > th dose dependent sin 9 NA
494 326.57 temperature 25.0 4320 > th dose independent sin 17 NA
526 326.65 temperature 30.0 4320 < th dose dependent rect. 13 7
528 326.66 temperature 25.0 4320 < th dose independent sin 17 NA
537 326.69 atmosphere 1010.0 270 < th dose dependent rect. 16 2
544 326.71 temperature 30.0 720 < th dose independent rect. 2 10
568 326.80 temperature 10.0 720 > th dose dependent sin 21 NA
609 326.90 temperature 30.0 720 < th dose dependent rect. 3 17
631 326.95 temperature 25.0 270 > th dose independent rect. 14 18
641 326.97 temperature 25.0 4320 > th dose independent rect. 10 16
651 326.99 temperature 25.0 1440 > th dose independent rect. 6 15
660 327.01 radiation 20.0 720 > th dose independent rect. 16 1
717 327.12 atmosphere 1005.0 90 < th dose independent rect. 16 7
726 327.13 humidity 60.0 10 < th dose independent sin 9 NA
749 327.18 wind 1.0 270 > th dose independent rect. 23 15
780 327.24 precipitation 0.1 90 < th dose independent rect. 16 19
781 327.24 precipitation 0.1 90 < th dose dependent rect. 16 19
794 327.27 temperature 30.0 720 < th dose independent sin 22 NA
800 327.28 temperature 30.0 720 < th dose independent sin 7 NA
830 327.33 temperature 20.0 4320 > th dose dependent rect. 17 1
842 327.35 wind 9.0 90 < th dose independent rect. 16 19
847 327.36 temperature 30.0 4320 < th dose dependent sin 20 NA
857 327.39 temperature 25.0 1440 > th dose independent rect. 1 20
861 327.40 temperature 20.0 4320 > th dose dependent rect. 17 3
870 327.42 temperature 10.0 4320 > th dose dependent rect. 17 1
903 327.49 radiation 1.0 270 < th dose independent sin 12 NA
905 327.49 humidity 60.0 10 < th dose independent rect. 16 20
932 327.53 temperature 20.0 4320 > th dose dependent rect. 19 1
960 327.58 wind 9.0 90 < th dose independent rect. 11 5
994 327.63 temperature 10.0 90 > th dose independent rect. 11 5
995 327.63 atmosphere 1015.0 90 < th dose independent rect. 11 5
996 327.63 temperature 10.0 90 > th dose independent rect. 16 19