Os08g0484800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os08g0484800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 81.56 | 0.424 | 8.84 | 0.714 | 1.33 | 1.58 | -0.872 | -0.323 | -0.568 | 19.1 | 22.38 | 65 | -- | -- |
| 81.43 | 0.424 | 8.84 | 0.67 | 1.31 | 1.62 | -0.818 | -- | -0.574 | 19 | 22.36 | 49 | -- | -- |
| 82.81 | 0.427 | 8.84 | 0.729 | 1.31 | 1.57 | -- | -0.463 | -0.57 | 19 | 22.27 | 45 | -- | -- |
| 83.02 | 0.427 | 8.84 | 0.694 | 1.31 | 1.71 | -- | -- | -0.582 | 19 | 21.94 | 28 | -- | -- |
| 172.56 | 0.615 | 8.8 | 0.741 | -- | 1.53 | -- | -0.617 | -0.568 | -- | 22.84 | 18 | -- | -- |
| 110.26 | 0.492 | 8.89 | 0.36 | 1.33 | -- | -0.943 | -- | -0.758 | 19.6 | -- | -- | -- | -- |
| 112.77 | 0.497 | 8.89 | 0.384 | 1.33 | -- | -- | -- | -0.759 | 19.6 | -- | -- | -- | -- |
| 173 | 0.613 | 8.81 | 0.675 | -- | 1.66 | -- | -- | -0.586 | -- | 22.6 | 11 | -- | -- |
| 94.59 | 0.453 | 8.86 | -- | 1.3 | 1.37 | -- | -- | -0.667 | 19.1 | 22.23 | 5 | -- | -- |
| 208.02 | 0.674 | 8.86 | 0.365 | -- | -- | -- | -- | -0.779 | -- | -- | -- | -- | -- |
| 116.66 | 0.505 | 8.9 | -- | 1.33 | -- | -- | -- | -0.802 | 19.6 | -- | -- | -- | -- |
| 183.65 | 0.633 | 8.83 | -- | -- | 1.43 | -- | -- | -0.683 | -- | 22.57 | 10 | -- | -- |
| 211.54 | 0.679 | 8.86 | -- | -- | -- | -- | -- | -0.819 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 82.20 | temperature | 20 | 90 | > th | dose independent | rect. | 17 | 23 |
| 2 | 82.92 | temperature | 20 | 90 | > th | dose independent | rect. | 3 | 23 |
| 3 | 83.02 | temperature | 20 | 90 | < th | dose independent | rect. | 5 | 23 |
| 4 | 83.32 | temperature | 20 | 90 | < th | dose independent | rect. | 7 | 22 |
| 8 | 83.57 | temperature | 20 | 90 | < th | dose independent | rect. | 9 | 23 |
| 9 | 83.60 | temperature | 20 | 90 | < th | dose independent | rect. | 21 | 23 |
| 13 | 83.72 | temperature | 20 | 90 | < th | dose independent | rect. | 13 | 23 |
| 14 | 83.72 | temperature | 20 | 90 | < th | dose independent | rect. | 15 | 23 |
| 15 | 83.73 | temperature | 20 | 90 | < th | dose independent | no | NA | NA |
| 16 | 83.73 | temperature | 20 | 90 | < th | dose independent | rect. | 17 | 23 |
| 17 | 83.75 | temperature | 20 | 90 | < th | dose independent | rect. | 9 | 20 |
| 18 | 83.84 | temperature | 20 | 90 | < th | dose independent | rect. | 15 | 21 |
| 21 | 83.84 | temperature | 20 | 90 | < th | dose independent | rect. | 19 | 23 |
| 31 | 84.01 | temperature | 20 | 90 | > th | dose independent | no | NA | NA |
| 38 | 84.21 | temperature | 20 | 90 | > th | dose independent | rect. | 15 | 23 |
| 44 | 84.37 | temperature | 20 | 90 | < th | dose independent | rect. | 1 | 23 |
| 46 | 84.38 | temperature | 20 | 90 | > th | dose independent | rect. | 1 | 23 |
| 54 | 84.53 | temperature | 20 | 90 | < th | dose independent | rect. | 17 | 19 |
| 59 | 84.57 | temperature | 20 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 62 | 84.60 | temperature | 20 | 10 | < th | dose dependent | rect. | 15 | 21 |
| 64 | 84.61 | temperature | 20 | 90 | < th | dose independent | rect. | 3 | 23 |
| 73 | 84.68 | temperature | 20 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 74 | 84.71 | temperature | 20 | 30 | < th | dose dependent | no | NA | NA |
| 75 | 84.71 | temperature | 20 | 30 | < th | dose dependent | rect. | 1 | 23 |
| 76 | 84.71 | temperature | 20 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 77 | 84.71 | temperature | 20 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 80 | 84.71 | temperature | 20 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 81 | 84.72 | temperature | 20 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 82 | 84.72 | temperature | 20 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 83 | 84.73 | temperature | 20 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 86 | 84.75 | temperature | 20 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 88 | 84.76 | temperature | 20 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 142 | 85.11 | temperature | 20 | 30 | < th | dose dependent | rect. | 11 | 19 |
| 256 | 85.72 | temperature | 20 | 30 | < th | dose dependent | sin | 7 | NA |
| 341 | 86.03 | temperature | 20 | 30 | > th | dose independent | rect. | 11 | 23 |
| 386 | 86.28 | temperature | 20 | 90 | < th | dose independent | rect. | 21 | 15 |
| 525 | 86.84 | humidity | 80 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 547 | 86.90 | temperature | 20 | 90 | > th | dose independent | rect. | 9 | 23 |
| 552 | 86.93 | temperature | 20 | 90 | < th | dose independent | sin | 11 | NA |
| 561 | 86.95 | temperature | 20 | 90 | > th | dose independent | rect. | 6 | 23 |
| 617 | 87.16 | temperature | 20 | 270 | > th | dose independent | rect. | 17 | 17 |
| 621 | 87.17 | temperature | 20 | 90 | > th | dose independent | sin | 11 | NA |
| 644 | 87.26 | humidity | 80 | 14400 | > th | dose dependent | rect. | 12 | 2 |
| 658 | 87.31 | temperature | 25 | 10 | < th | dose dependent | sin | 11 | NA |
| 676 | 87.37 | temperature | 25 | 90 | < th | dose dependent | sin | 12 | NA |
| 686 | 87.40 | temperature | 25 | 270 | < th | dose dependent | rect. | 14 | 14 |
| 750 | 87.55 | humidity | 90 | 14400 | > th | dose dependent | rect. | 9 | 1 |
| 762 | 87.58 | temperature | 20 | 90 | < th | dose independent | rect. | 15 | 14 |
| 763 | 87.58 | temperature | 20 | 90 | > th | dose independent | rect. | 21 | 23 |
| 765 | 87.58 | humidity | 80 | 14400 | > th | dose dependent | rect. | 10 | 5 |
| 825 | 87.69 | temperature | 20 | 30 | < th | dose dependent | rect. | 15 | 17 |
| 846 | 87.74 | humidity | 80 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 905 | 87.90 | humidity | 80 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 932 | 87.98 | temperature | 20 | 720 | > th | dose independent | rect. | 9 | 14 |
| 968 | 88.07 | humidity | 80 | 14400 | > th | dose independent | rect. | 10 | 6 |