Os08g0484600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : OSK4.
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Os08g0484600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : OSK4.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 32.32 | 0.267 | 11 | 0.906 | 0.567 | 1.45 | 0.46 | 3.66 | 0.38 | 10.8 | 0.635 | 1441 | -- | -- |
| 35.1 | 0.276 | 11 | 1.19 | 0.507 | 0.549 | 0.492 | -- | 0.453 | 10.7 | 3.771 | 4258 | -- | -- |
| 32.68 | 0.266 | 11 | 0.926 | 0.462 | 1.52 | -- | 3.79 | 0.39 | 10.7 | 0.6124 | 1412 | -- | -- |
| 36.08 | 0.28 | 11 | 1.23 | 0.502 | 0.594 | -- | -- | 0.481 | 10.8 | 3.651 | 4262 | -- | -- |
| 38.53 | 0.289 | 11.1 | 0.863 | -- | 1.54 | -- | 3.74 | 0.392 | -- | 0.4904 | 2717 | -- | -- |
| 42.24 | 0.305 | 11 | 1.11 | 0.578 | -- | 0.533 | -- | 0.349 | 11 | -- | -- | -- | -- |
| 43.44 | 0.309 | 11 | 1.13 | 0.575 | -- | -- | -- | 0.351 | 11 | -- | -- | -- | -- |
| 39.95 | 0.294 | 11 | 1.23 | -- | 1.04 | -- | -- | 0.394 | -- | 3.196 | 1222 | -- | -- |
| 68.6 | 0.386 | 11 | -- | 0.537 | 0.589 | -- | -- | 0.403 | 10.6 | 20 | 9937 | -- | -- |
| 64.02 | 0.374 | 11 | 1.12 | -- | -- | -- | -- | 0.346 | -- | -- | -- | -- | -- |
| 77.06 | 0.411 | 11 | -- | 0.566 | -- | -- | -- | 0.225 | 10.8 | -- | -- | -- | -- |
| 76.32 | 0.407 | 11 | -- | -- | 0.984 | -- | -- | 0.374 | -- | 9.99 | 2598 | -- | -- |
| 96.92 | 0.46 | 11 | -- | -- | -- | -- | -- | 0.223 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 30.98 | temperature | 25 | 14400 | > th | dose dependent | rect. | 17 | 5 |
| 2 | 30.99 | temperature | 25 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 4 | 30.99 | temperature | 25 | 14400 | > th | dose dependent | rect. | 17 | 17 |
| 10 | 31.02 | temperature | 25 | 14400 | > th | dose independent | rect. | 18 | 6 |
| 17 | 31.04 | temperature | 25 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 30 | 31.06 | temperature | 25 | 14400 | > th | dose dependent | rect. | 20 | 1 |
| 38 | 31.07 | temperature | 25 | 14400 | < th | dose independent | rect. | 19 | 4 |
| 50 | 31.08 | temperature | 25 | 14400 | > th | dose independent | rect. | 17 | 15 |
| 77 | 31.10 | temperature | 25 | 14400 | < th | dose independent | rect. | 17 | 15 |
| 103 | 31.12 | temperature | 25 | 14400 | > th | dose dependent | sin | 12 | NA |
| 111 | 31.13 | temperature | 25 | 14400 | < th | dose independent | rect. | 6 | 2 |
| 119 | 31.13 | temperature | 25 | 14400 | > th | dose dependent | sin | 8 | NA |
| 152 | 31.15 | temperature | 25 | 14400 | > th | dose independent | rect. | 6 | 2 |
| 198 | 31.17 | temperature | 25 | 14400 | > th | dose dependent | rect. | 6 | 17 |
| 215 | 31.18 | temperature | 25 | 14400 | > th | dose dependent | no | NA | NA |
| 250 | 31.19 | temperature | 25 | 14400 | > th | dose independent | sin | 12 | NA |
| 311 | 31.21 | temperature | 25 | 14400 | < th | dose independent | sin | 12 | NA |
| 679 | 31.39 | temperature | 30 | 14400 | < th | dose independent | rect. | 18 | 22 |
| 694 | 31.41 | temperature | 30 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 701 | 31.41 | temperature | 30 | 14400 | < th | dose independent | rect. | 8 | 8 |
| 704 | 31.41 | temperature | 30 | 14400 | < th | dose independent | rect. | 22 | 18 |
| 784 | 31.46 | temperature | 30 | 14400 | > th | dose independent | rect. | 12 | 3 |
| 815 | 31.47 | temperature | 30 | 14400 | > th | dose independent | rect. | 8 | 8 |
| 843 | 31.48 | temperature | 30 | 14400 | < th | dose independent | sin | 1 | NA |
| 859 | 31.49 | temperature | 30 | 14400 | < th | dose independent | sin | 23 | NA |
| 910 | 31.51 | temperature | 30 | 14400 | < th | dose independent | no | NA | NA |