FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0484100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Exo-1,3-beta-glucanase precursor (EC 3.2.1.58) (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.17 (0.0201) R2 : 0.0022
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0423 (0.0422) R2dN8 : 0.00283 R2N8 : 0.0022
σ : 0.378
deviance : 65.54
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
60.34 0.365 3.14 0.202 0.43 -0.309 -1.72 1.77 0.00591 11.2 0.31 84 -- --
62.66 0.369 3.15 0.113 0.433 -0.316 0.235 -- -0.00063 11.4 0.1333 93 -- --
62.33 0.371 3.15 0.105 0.348 -0.211 -- 0.356 -0.0317 10.2 0.31 84 -- --
62.86 0.369 3.15 0.106 0.438 -0.32 -- -- -0.00555 11.3 0.04994 93 -- --
64.42 0.374 3.16 0.0885 -- 0.0128 -- 0.392 -0.0287 -- 0.7768 102 -- --
64.17 0.376 3.16 0.0829 0.147 -- 0.0301 -- -0.0349 7.73 -- -- -- --
64.17 0.375 3.16 0.0835 0.148 -- -- -- -0.035 7.63 -- -- -- --
64.94 0.377 3.16 0.0917 -- 0.0626 -- -- -0.0279 -- 9.61 20 -- --
63.17 0.37 3.15 -- 0.384 -0.278 -- -- -0.0157 11.2 0.04882 93 -- --
65.34 0.378 3.16 0.0856 -- -- -- -- -0.0328 -- -- -- -- --
64.35 0.375 3.16 -- 0.149 -- -- -- -0.0443 7.59 -- -- -- --
65.16 0.377 3.17 -- -- 0.0603 -- -- -0.0382 -- 9.61 20 -- --
65.54 0.378 3.17 -- -- -- -- -- -0.0423 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 58.33 atmosphere 1005.0 30 > th dose dependent rect. 2 3
4 58.90 temperature 25.0 270 > th dose independent rect. 1 1
6 59.27 temperature 25.0 90 > th dose independent rect. 1 4
11 59.60 temperature 30.0 90 > th dose dependent rect. 10 1
14 59.63 temperature 25.0 90 > th dose dependent rect. 2 3
15 59.68 temperature 25.0 270 > th dose dependent rect. 1 1
23 59.88 atmosphere 1015.0 30 < th dose dependent rect. 2 1
25 59.90 wind 1.0 30 < th dose independent rect. 2 1
27 59.91 wind 3.0 10 < th dose dependent rect. 2 1
28 59.92 humidity 90.0 270 < th dose independent rect. 1 1
32 59.95 radiation 1.0 30 < th dose dependent rect. 2 14
33 59.96 temperature 25.0 30 < th dose independent rect. 2 1
36 59.96 radiation 1.0 90 < th dose dependent rect. 1 23
43 59.99 wind 9.0 30 < th dose independent rect. 2 1
44 59.99 temperature 10.0 30 > th dose independent rect. 2 1
47 59.99 humidity 50.0 30 > th dose independent rect. 2 1
50 59.99 atmosphere 995.0 30 > th dose independent rect. 2 1
51 59.99 atmosphere 1010.0 30 < th dose independent rect. 2 1
53 59.99 radiation 1.0 30 < th dose independent rect. 2 1
58 59.99 precipitation 0.1 30 < th dose independent rect. 2 1
59 59.99 temperature 10.0 30 > th dose independent rect. 3 23
60 59.99 radiation 1.0 30 < th dose dependent rect. 2 1
65 59.99 precipitation 0.1 30 < th dose dependent rect. 2 1
69 60.00 humidity 50.0 30 > th dose dependent rect. 2 1
71 60.01 temperature 10.0 30 > th dose dependent rect. 2 1
74 60.02 humidity 90.0 10 < th dose independent rect. 3 2
77 60.02 radiation 1.0 10 < th dose dependent rect. 2 12
82 60.03 temperature 30.0 30 < th dose dependent rect. 2 1
83 60.04 radiation 1.0 10 < th dose independent rect. 2 12
90 60.06 humidity 90.0 10 < th dose dependent rect. 4 1
102 60.09 atmosphere 995.0 30 > th dose dependent rect. 2 1
110 60.15 atmosphere 1005.0 30 > th dose independent rect. 2 1
112 60.15 wind 9.0 30 < th dose independent rect. 3 23
147 60.28 temperature 30.0 10 < th dose dependent rect. 4 1
150 60.31 atmosphere 1005.0 30 > th dose independent rect. 2 3
156 60.32 radiation 1.0 30 < th dose dependent rect. 19 23
157 60.33 wind 1.0 30 > th dose independent rect. 2 1
160 60.36 temperature 25.0 30 < th dose independent rect. 4 1
162 60.39 radiation 1.0 90 < th dose independent rect. 1 23
163 60.41 radiation 1.0 90 < th dose dependent rect. 17 23
166 60.46 radiation 1.0 90 < th dose dependent no NA NA
167 60.46 radiation 1.0 90 < th dose dependent rect. 12 23
170 60.47 radiation 1.0 90 < th dose dependent rect. 8 23
173 60.47 radiation 1.0 90 < th dose dependent rect. 15 23
182 60.51 radiation 1.0 10 < th dose dependent rect. 4 10
185 60.51 radiation 1.0 90 < th dose dependent rect. 12 19
190 60.52 wind 3.0 30 < th dose independent rect. 2 3
198 60.56 radiation 1.0 30 < th dose dependent rect. 2 10
200 60.57 radiation 1.0 10 < th dose dependent rect. 2 4
201 60.57 radiation 1.0 30 < th dose dependent rect. 2 6
206 60.58 radiation 1.0 10 < th dose independent rect. 2 6
219 60.59 radiation 1.0 10 < th dose independent rect. 2 4
220 60.59 atmosphere 1000.0 30 > th dose independent rect. 5 21
225 60.60 radiation 1.0 30 < th dose independent rect. 19 23
229 60.63 wind 5.0 10 < th dose independent rect. 4 1
236 60.64 radiation 1.0 30 < th dose dependent sin 2 NA
239 60.65 wind 9.0 10 < th dose dependent rect. 4 1
248 60.66 radiation 1.0 10 < th dose dependent rect. 4 1
253 60.69 temperature 10.0 10 > th dose independent rect. 4 1
256 60.69 humidity 50.0 10 > th dose independent rect. 4 1
260 60.69 atmosphere 995.0 10 > th dose independent rect. 4 1
261 60.69 atmosphere 1010.0 10 < th dose independent rect. 4 1
263 60.69 radiation 1.0 10 < th dose independent rect. 4 1
270 60.69 temperature 10.0 10 > th dose independent rect. 5 23
271 60.69 atmosphere 995.0 10 > th dose dependent rect. 4 1
282 60.71 humidity 50.0 10 > th dose dependent rect. 4 1
284 60.72 precipitation 0.1 10 < th dose independent rect. 4 1
285 60.72 radiation 1.0 10 < th dose independent rect. 4 10
290 60.72 precipitation 0.1 10 < th dose dependent rect. 4 1
296 60.75 radiation 1.0 90 > th dose independent rect. 16 23
298 60.75 atmosphere 1015.0 10 < th dose dependent rect. 4 1
310 60.78 temperature 10.0 30 > th dose dependent rect. 2 3
320 60.81 humidity 90.0 270 < th dose independent rect. 1 4
330 60.83 radiation 1.0 90 < th dose independent rect. 7 23
332 60.85 radiation 1.0 90 < th dose independent rect. 17 23
340 60.88 radiation 1.0 90 > th dose independent no NA NA
341 60.88 radiation 1.0 90 < th dose independent no NA NA
342 60.88 wind 1.0 10 > th dose independent rect. 4 1
343 60.88 radiation 1.0 90 > th dose independent rect. 4 14
400 60.88 radiation 1.0 90 < th dose independent rect. 11 23
402 60.88 wind 7.0 30 < th dose dependent rect. 2 3
405 60.89 radiation 1.0 10 > th dose independent sin 3 NA
409 60.90 radiation 1.0 90 < th dose independent rect. 12 19
412 60.90 radiation 1.0 90 < th dose independent rect. 15 23
441 60.93 temperature 10.0 10 > th dose dependent rect. 4 1
469 60.96 radiation 1.0 10 < th dose independent sin 2 NA
487 60.98 wind 1.0 90 > th dose independent rect. 2 3
494 60.99 precipitation 0.1 30 < th dose independent rect. 2 3
501 60.99 precipitation 0.1 30 < th dose dependent rect. 2 3
551 61.02 temperature 10.0 30 > th dose independent rect. 2 3
553 61.02 temperature 30.0 30 < th dose independent rect. 2 3
554 61.02 humidity 50.0 30 > th dose independent rect. 2 3
558 61.02 atmosphere 1010.0 30 < th dose independent rect. 2 3
566 61.02 temperature 10.0 30 > th dose independent rect. 5 21
596 61.04 precipitation 0.1 30 < th dose independent rect. 5 21
599 61.04 precipitation 0.1 30 < th dose dependent rect. 5 21
615 61.07 wind 9.0 30 < th dose independent rect. 5 21
633 61.10 temperature 25.0 90 > th dose independent rect. 4 1
665 61.13 wind 9.0 1440 < th dose independent rect. 3 3
666 61.13 temperature 10.0 1440 > th dose independent rect. 3 3
669 61.13 temperature 30.0 1440 < th dose independent rect. 3 3
673 61.13 humidity 50.0 1440 > th dose independent rect. 3 3
682 61.13 atmosphere 995.0 1440 > th dose independent rect. 3 3
683 61.13 radiation 20.0 1440 < th dose independent rect. 3 3
694 61.13 temperature 10.0 1440 > th dose independent rect. 6 21
699 61.13 temperature 25.0 90 > th dose dependent rect. 4 1
705 61.14 atmosphere 995.0 30 > th dose independent rect. 3 23
710 61.15 humidity 50.0 30 > th dose independent rect. 5 21
713 61.15 wind 1.0 30 > th dose dependent rect. 4 1
723 61.16 radiation 1.0 30 < th dose dependent rect. 2 19
740 61.19 radiation 1.0 30 < th dose independent rect. 19 21
847 61.22 temperature 10.0 30 > th dose dependent rect. 5 21
898 61.26 temperature 25.0 10 > th dose independent rect. 2 3
904 61.27 wind 7.0 1440 < th dose independent rect. 5 1
906 61.27 temperature 10.0 1440 > th dose independent rect. 5 1
909 61.27 temperature 30.0 1440 < th dose independent rect. 5 1
913 61.27 humidity 50.0 1440 > th dose independent rect. 5 1
922 61.27 atmosphere 995.0 1440 > th dose independent rect. 5 1
923 61.27 atmosphere 1015.0 1440 < th dose independent rect. 5 1
924 61.27 radiation 20.0 1440 < th dose independent rect. 5 1
947 61.27 temperature 10.0 1440 > th dose independent rect. 6 23
950 61.27 atmosphere 995.0 10 > th dose independent rect. 5 23