Os08g0484000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Copia-type polyprotein.
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Os08g0484000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Copia-type polyprotein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = precipitation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 154.27 | 0.584 | 2.79 | 0.153 | 0.171 | 1.41 | 0.0807 | 2.47 | 0.112 | 6.77 | 0.5623 | 77 | -- | -- |
| 154.27 | 0.578 | 2.8 | 0.141 | 0.166 | 1.97 | 0.0675 | -- | 0.11 | 6.85 | 0.6799 | 77 | -- | -- |
| 154.23 | 0.578 | 2.79 | 0.162 | 0.171 | 1.36 | -- | 2.31 | 0.113 | 6.82 | 0.8086 | 77 | -- | -- |
| 154.28 | 0.578 | 2.79 | 0.145 | 0.173 | 1.99 | -- | -- | 0.113 | 6.79 | 0.6863 | 77 | -- | -- |
| 155.7 | 0.581 | 2.79 | 0.179 | -- | 0.454 | -- | 5.19 | 0.118 | -- | 0.8717 | 77 | -- | -- |
| 161.33 | 0.595 | 2.8 | 0.188 | 0.137 | -- | -0.0949 | -- | 0.104 | 6.85 | -- | -- | -- | -- |
| 161.36 | 0.595 | 2.8 | 0.187 | 0.137 | -- | -- | -- | 0.104 | 6.78 | -- | -- | -- | -- |
| 155.81 | 0.581 | 2.8 | 0.149 | -- | 1.9 | -- | -- | 0.115 | -- | 0.7029 | 77 | -- | -- |
| 154.81 | 0.579 | 2.8 | -- | 0.173 | 2 | -- | -- | 0.0962 | 6.77 | 0.7229 | 77 | -- | -- |
| 162.34 | 0.595 | 2.8 | 0.19 | -- | -- | -- | -- | 0.107 | -- | -- | -- | -- | -- |
| 162.28 | 0.596 | 2.8 | -- | 0.139 | -- | -- | -- | 0.0832 | 6.7 | -- | -- | -- | -- |
| 156.39 | 0.582 | 2.8 | -- | -- | 1.96 | -- | -- | 0.0989 | -- | 0.6724 | 77 | -- | -- |
| 163.29 | 0.596 | 2.8 | -- | -- | -- | -- | -- | 0.0856 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 140.39 | temperature | 3e+01 | 90 | > th | dose dependent | rect. | 8 | 1 |
| 15 | 140.46 | temperature | 3e+01 | 90 | > th | dose dependent | rect. | 18 | 16 |
| 16 | 140.52 | temperature | 3e+01 | 90 | > th | dose independent | rect. | 8 | 1 |
| 44 | 140.60 | temperature | 3e+01 | 10 | > th | dose dependent | rect. | 18 | 16 |
| 111 | 141.28 | humidity | 8e+01 | 10 | < th | dose independent | rect. | 5 | 1 |
| 116 | 141.28 | humidity | 8e+01 | 10 | < th | dose dependent | rect. | 5 | 1 |
| 214 | 144.42 | wind | 3e+00 | 10 | > th | dose dependent | rect. | 6 | 1 |
| 233 | 146.52 | wind | 3e+00 | 10 | > th | dose independent | rect. | 5 | 2 |
| 278 | 148.32 | humidity | 7e+01 | 90 | < th | dose dependent | rect. | 8 | 1 |
| 288 | 148.75 | humidity | 8e+01 | 270 | < th | dose dependent | rect. | 2 | 6 |
| 295 | 149.38 | atmosphere | 1e+03 | 10 | < th | dose independent | rect. | 8 | 3 |
| 298 | 149.42 | atmosphere | 1e+03 | 90 | < th | dose independent | rect. | 8 | 1 |
| 331 | 150.43 | humidity | 7e+01 | 90 | < th | dose independent | rect. | 8 | 1 |
| 337 | 150.77 | humidity | 8e+01 | 270 | < th | dose independent | rect. | 2 | 6 |
| 371 | 152.05 | atmosphere | 1e+03 | 90 | < th | dose dependent | rect. | 8 | 1 |
| 387 | 152.15 | atmosphere | 1e+03 | 10 | < th | dose dependent | rect. | 10 | 1 |
| 389 | 152.17 | atmosphere | 1e+03 | 10 | < th | dose dependent | rect. | 8 | 3 |
| 473 | 152.91 | temperature | 3e+01 | 10 | > th | dose independent | sin | 10 | NA |
| 474 | 152.96 | radiation | 4e+01 | 10 | > th | dose independent | rect. | 9 | 1 |
| 493 | 152.98 | precipitation | 1e-01 | 30 | > th | dose independent | rect. | 17 | 3 |
| 513 | 153.04 | atmosphere | 1e+03 | 270 | < th | dose independent | rect. | 5 | 5 |
| 518 | 153.09 | temperature | 3e+01 | 90 | > th | dose independent | sin | 10 | NA |
| 521 | 153.14 | precipitation | 1e-01 | 90 | > th | dose dependent | rect. | 17 | 3 |
| 601 | 153.42 | precipitation | 1e-01 | 30 | > th | dose independent | sin | 20 | NA |
| 610 | 153.46 | wind | 1e+00 | 4320 | < th | dose dependent | rect. | 16 | 5 |
| 622 | 153.50 | precipitation | 1e-01 | 30 | > th | dose dependent | sin | 21 | NA |
| 623 | 153.51 | radiation | 4e+01 | 10 | > th | dose independent | sin | 11 | NA |
| 629 | 153.53 | precipitation | 1e-01 | 30 | < th | dose independent | sin | 19 | NA |
| 631 | 153.53 | precipitation | 1e-01 | 30 | < th | dose dependent | sin | 19 | NA |
| 681 | 153.63 | wind | 1e+00 | 270 | < th | dose independent | rect. | 18 | 2 |
| 722 | 153.64 | wind | 1e+00 | 4320 | < th | dose independent | rect. | 19 | 2 |
| 727 | 153.65 | wind | 1e+00 | 270 | < th | dose dependent | rect. | 18 | 2 |
| 864 | 153.94 | wind | 1e+00 | 4320 | < th | dose dependent | rect. | 19 | 2 |
| 891 | 154.00 | temperature | 3e+01 | 90 | < th | dose independent | sin | 9 | NA |
| 893 | 154.00 | radiation | 3e+01 | 10 | > th | dose dependent | rect. | 9 | 1 |
| 933 | 154.05 | atmosphere | 1e+03 | 10 | < th | dose independent | rect. | 6 | 5 |
| 996 | 154.09 | wind | 1e+00 | 4320 | > th | dose independent | rect. | 19 | 2 |
| 997 | 154.09 | humidity | 8e+01 | 1440 | > th | dose independent | rect. | 4 | 2 |