FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0483700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, unclassifiable transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.54 (0.0355) R2 : 0.344
β1 : -1.01 (0.13) R2dD : 0.0896 R2D : 0.0532
β2 : 1.05 (0.0866) R2dC : 0.213 R2C : 0.208
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.467 (0.0758) R2dN8 : 0.0733 R2N8 : 0.0346
σ : 0.667
deviance : 203.1
__
_____
C
peak time of C : 14.3
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
190.2 0.648 4.49 -0.719 1.38 -1.12 -0.101 0.429 -0.287 14.3 15.2 10 -- --
190.32 0.643 4.5 -0.78 1.37 -1.11 -0.00255 -- -0.302 14.3 15.2 10 -- --
190.22 0.642 4.49 -0.737 1.38 -1.13 -- 0.311 -0.29 14.3 15.2 10 -- --
190.31 0.643 4.5 -0.781 1.38 -1.12 -- -- -0.303 14.3 15.2 10 -- --
259.75 0.755 4.57 -1.3 -- 0.725 -- -1.7 -0.562 -- 25.62 16 -- --
203.01 0.668 4.54 -1 1.05 -- -0.155 -- -0.466 14.3 -- -- -- --
203.1 0.667 4.54 -1.01 1.05 -- -- -- -0.467 14.3 -- -- -- --
260.66 0.755 4.55 -1.13 -- 0.591 -- -- -0.532 -- 25.1 22 -- --
204.89 0.667 4.47 -- 1.5 -1.49 -- -- -0.171 14.3 15.15 12 -- --
269 0.766 4.54 -1.05 -- -- -- -- -0.493 -- -- -- -- --
229.81 0.709 4.51 -- 1.07 -- -- -- -0.355 14.3 -- -- -- --
293.65 0.801 4.52 -- -- 0.43 -- -- -0.398 -- 25.1 22 -- --
298.14 0.806 4.52 -- -- -- -- -- -0.376 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 183.21 temperature 10.0 90 > th dose dependent rect. 6 17
3 184.69 temperature 10.0 10 > th dose dependent rect. 2 23
5 185.12 temperature 30.0 10 < th dose dependent rect. 11 20
7 185.27 temperature 15.0 10 > th dose dependent rect. 7 17
17 185.75 temperature 10.0 30 > th dose dependent rect. 18 17
37 186.18 temperature 30.0 10 < th dose dependent rect. 24 18
38 186.18 temperature 30.0 90 < th dose dependent rect. 23 19
39 186.21 temperature 30.0 30 < th dose independent rect. 11 7
46 186.56 temperature 10.0 270 > th dose dependent rect. 4 18
50 186.68 temperature 15.0 10 > th dose dependent rect. 4 20
52 186.69 temperature 15.0 90 > th dose dependent rect. 17 23
55 186.79 wind 1.0 30 > th dose independent rect. 11 7
68 187.17 temperature 15.0 10 > th dose dependent rect. 17 23
78 187.45 temperature 15.0 30 > th dose dependent rect. 6 23
80 187.57 temperature 30.0 30 < th dose independent rect. 24 18
84 187.61 temperature 30.0 10 < th dose dependent rect. 11 7
102 187.82 temperature 30.0 10 < th dose dependent rect. 8 23
124 188.19 temperature 20.0 90 > th dose independent rect. 6 17
142 188.39 temperature 30.0 90 < th dose dependent rect. 23 13
163 188.63 temperature 30.0 90 < th dose dependent rect. 23 22
190 188.88 temperature 15.0 270 > th dose dependent rect. 15 22
196 188.93 temperature 25.0 90 < th dose independent rect. 10 20
197 188.93 temperature 15.0 30 > th dose dependent rect. 18 20
198 188.94 temperature 30.0 10 < th dose dependent rect. 14 23
208 189.00 temperature 30.0 10 < th dose dependent rect. 20 22
216 189.10 humidity 50.0 10 > th dose dependent rect. 11 7
222 189.13 temperature 30.0 10 < th dose dependent rect. 24 13
224 189.15 temperature 15.0 1440 > th dose independent rect. 11 8
225 189.15 atmosphere 1015.0 720 < th dose independent rect. 2 8
226 189.16 temperature 20.0 30 > th dose independent rect. 18 17
242 189.27 temperature 10.0 30 > th dose independent rect. 11 7
244 189.27 atmosphere 1015.0 30 < th dose independent rect. 11 7
245 189.27 wind 9.0 30 < th dose independent rect. 18 17
246 189.27 temperature 10.0 30 > th dose independent rect. 18 17
247 189.27 humidity 50.0 30 > th dose independent rect. 18 17
248 189.27 atmosphere 995.0 30 > th dose independent rect. 18 17
254 189.29 wind 7.0 10 < th dose independent rect. 2 23
272 189.40 temperature 30.0 270 < th dose dependent rect. 21 21
276 189.41 temperature 30.0 10 < th dose dependent rect. 5 23
290 189.51 temperature 30.0 10 < th dose dependent rect. 23 23
292 189.54 temperature 15.0 270 > th dose dependent rect. 15 20
299 189.58 temperature 25.0 90 > th dose independent rect. 17 23
321 189.72 wind 9.0 30 < th dose independent rect. 11 7
348 189.84 precipitation 0.1 30 < th dose independent rect. 11 7
350 189.84 precipitation 0.1 30 < th dose dependent rect. 11 7
359 189.88 wind 1.0 10 > th dose dependent rect. 11 7
369 189.93 atmosphere 1015.0 30 < th dose independent rect. 18 17
383 190.01 temperature 15.0 30 > th dose dependent rect. 15 23
394 190.05 precipitation 0.1 30 < th dose independent rect. 18 17
395 190.05 precipitation 0.1 30 < th dose dependent rect. 18 17
415 190.19 temperature 15.0 270 > th dose dependent rect. 2 8
418 190.21 temperature 15.0 10 > th dose dependent no NA NA
432 190.28 temperature 10.0 1440 > th dose independent rect. 19 17
435 190.28 atmosphere 995.0 1440 > th dose independent rect. 19 17
444 190.31 humidity 50.0 30 > th dose independent rect. 11 7
461 190.36 atmosphere 1015.0 720 < th dose independent rect. 22 16
487 190.41 wind 7.0 90 < th dose independent rect. 6 17
495 190.43 temperature 30.0 10 < th dose dependent no NA NA
503 190.44 atmosphere 995.0 30 > th dose dependent rect. 11 7
573 190.67 wind 1.0 10 > th dose dependent rect. 8 10
592 190.75 temperature 15.0 10 > th dose dependent rect. 9 15
595 190.77 atmosphere 1015.0 720 < th dose independent rect. 2 17
602 190.79 temperature 15.0 720 > th dose independent rect. 7 7
621 190.88 temperature 15.0 720 > th dose independent rect. 2 8
646 190.98 temperature 25.0 30 > th dose independent rect. 4 20
678 191.09 wind 7.0 90 < th dose independent rect. 2 22
681 191.10 temperature 25.0 90 < th dose independent rect. 14 22
694 191.14 temperature 30.0 10 < th dose dependent rect. 11 17
713 191.19 atmosphere 995.0 30 > th dose independent rect. 11 7
730 191.23 wind 7.0 10 < th dose independent rect. 7 16
749 191.29 temperature 25.0 90 > th dose independent rect. 1 22
763 191.33 temperature 10.0 720 > th dose dependent rect. 22 16
772 191.35 temperature 30.0 30 < th dose dependent rect. 3 23
782 191.38 temperature 25.0 90 > th dose independent rect. 12 23
832 191.49 radiation 1.0 1440 > th dose independent rect. 8 3
836 191.51 temperature 15.0 720 > th dose independent rect. 22 16
838 191.52 wind 5.0 43200 < th dose independent rect. 20 1
846 191.53 wind 1.0 10 > th dose dependent rect. 5 13
861 191.56 wind 5.0 43200 > th dose independent rect. 20 1
919 191.69 temperature 15.0 90 > th dose dependent rect. 12 23
925 191.71 temperature 10.0 720 > th dose dependent rect. 2 12
932 191.72 wind 5.0 43200 > th dose dependent rect. 20 1
937 191.74 temperature 25.0 14400 > th dose independent rect. 1 7
968 191.80 temperature 30.0 10 < th dose dependent rect. 14 17
975 191.81 temperature 15.0 30 > th dose dependent sin 6 NA