Os08g0483100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os08g0483100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 154.46 | 0.584 | 7.38 | -2.63 | 0.922 | 1.4 | -1.04 | 1.51 | -0.726 | 16.9 | 21.18 | 643 | -- | -- |
| 159.41 | 0.588 | 7.43 | -2.98 | 0.94 | 1.26 | -0.611 | -- | -0.835 | 16.8 | 21.6 | 669 | -- | -- |
| 155.93 | 0.582 | 7.39 | -2.63 | 0.97 | 1.33 | -- | 1.33 | -0.741 | 17 | 21.4 | 765 | -- | -- |
| 160.23 | 0.59 | 7.43 | -2.98 | 0.94 | 1.24 | -- | -- | -0.828 | 17.1 | 21.51 | 669 | -- | -- |
| 198.07 | 0.655 | 7.38 | -2.74 | -- | 1.5 | -- | 1.27 | -0.755 | -- | 21.17 | 523 | -- | -- |
| 219.12 | 0.694 | 7.36 | -2.53 | 1.09 | -- | -0.108 | -- | -0.466 | 17.8 | -- | -- | -- | -- |
| 219.15 | 0.693 | 7.36 | -2.53 | 1.09 | -- | -- | -- | -0.467 | 17.8 | -- | -- | -- | -- |
| 202.51 | 0.663 | 7.43 | -3.03 | -- | 1.36 | -- | -- | -0.878 | -- | 21.46 | 546 | -- | -- |
| 368.23 | 0.894 | 7.33 | -- | 1.06 | 0.613 | -- | -- | -0.374 | 17.3 | 22.3 | 663 | -- | -- |
| 280.59 | 0.783 | 7.34 | -2.56 | -- | -- | -- | -- | -0.492 | -- | -- | -- | -- | -- |
| 387.25 | 0.921 | 7.29 | -- | 1.13 | -- | -- | -- | -0.185 | 17.7 | -- | -- | -- | -- |
| 423.86 | 0.959 | 7.29 | -- | -- | 0.87 | -- | -- | -0.283 | -- | 28.4 | 481 | -- | -- |
| 453.36 | 0.994 | 7.27 | -- | -- | -- | -- | -- | -0.208 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 151.40 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 18 | 14 |
| 2 | 151.65 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 19 | 12 |
| 5 | 151.97 | temperature | 30.0 | 720 | < th | dose dependent | sin | 11 | NA |
| 48 | 154.64 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 17 | 16 |
| 99 | 156.46 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 21 | 8 |
| 106 | 156.54 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 19 | 14 |
| 124 | 156.96 | temperature | 20.0 | 720 | > th | dose dependent | sin | 11 | NA |
| 228 | 159.05 | temperature | 25.0 | 720 | < th | dose dependent | no | NA | NA |
| 249 | 159.46 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 5 | 23 |
| 261 | 159.70 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 265 | 159.82 | temperature | 25.0 | 270 | < th | dose dependent | sin | 7 | NA |
| 276 | 160.11 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 1 | 23 |
| 313 | 160.84 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 23 | 20 |
| 349 | 161.52 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 359 | 161.65 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 20 | 3 |
| 382 | 162.14 | temperature | 20.0 | 270 | < th | dose independent | rect. | 24 | 21 |
| 425 | 162.63 | temperature | 20.0 | 270 | > th | dose independent | rect. | 12 | 23 |
| 433 | 162.72 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 12 |
| 450 | 162.95 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 24 | 9 |
| 491 | 163.49 | temperature | 20.0 | 270 | > th | dose independent | rect. | 10 | 23 |
| 494 | 163.51 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 20 | 2 |
| 495 | 163.51 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 20 | 2 |
| 506 | 163.65 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 20 | 2 |
| 553 | 164.37 | temperature | 20.0 | 720 | > th | dose independent | rect. | 3 | 22 |
| 554 | 164.37 | temperature | 20.0 | 720 | > th | dose independent | rect. | 7 | 22 |
| 562 | 164.46 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 17 | 2 |
| 575 | 164.62 | temperature | 20.0 | 720 | > th | dose independent | rect. | 13 | 16 |
| 583 | 164.73 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 17 | 4 |
| 636 | 165.32 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 17 | 5 |
| 643 | 165.38 | temperature | 20.0 | 270 | > th | dose independent | rect. | 24 | 23 |
| 703 | 165.80 | temperature | 20.0 | 720 | < th | dose independent | rect. | 3 | 20 |
| 706 | 165.84 | temperature | 20.0 | 720 | > th | dose independent | sin | 14 | NA |
| 729 | 165.98 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 6 |
| 736 | 166.01 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 761 | 166.19 | temperature | 20.0 | 270 | < th | dose independent | sin | 6 | NA |
| 816 | 166.51 | temperature | 15.0 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 835 | 166.61 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 4 |
| 841 | 166.65 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 20 | 1 |
| 908 | 166.99 | temperature | 20.0 | 720 | < th | dose independent | rect. | 9 | 21 |
| 979 | 167.31 | wind | 9.0 | 43200 | > th | dose independent | rect. | 18 | 13 |
| 985 | 167.33 | temperature | 20.0 | 720 | > th | dose independent | rect. | 13 | 20 |
| 987 | 167.35 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 20 | 7 |