Os08g0480800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to TaWIN2.
FiT-DB / Search/ Help/ Sample detail
|
Os08g0480800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to TaWIN2.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 22.31 | 0.222 | 14.6 | 0.37 | 0.969 | 0.685 | -0.273 | 0.108 | 0.0888 | 23 | 29.54 | 2074 | -- | -- |
| 22.31 | 0.22 | 14.6 | 0.389 | 0.971 | 0.689 | -0.286 | -- | 0.0887 | 23 | 29.56 | 2089 | -- | -- |
| 22.62 | 0.222 | 14.6 | 0.36 | 0.973 | 0.674 | -- | 0.234 | 0.0849 | 23 | 29.58 | 2090 | -- | -- |
| 22.63 | 0.222 | 14.6 | 0.403 | 0.974 | 0.701 | -- | -- | 0.0921 | 23 | 29.55 | 2090 | -- | -- |
| 68.09 | 0.386 | 14.6 | 0.416 | -- | 0.637 | -- | -0.722 | 0.123 | -- | 29.58 | 2090 | -- | -- |
| 36.46 | 0.283 | 14.6 | 0.214 | 0.889 | -- | -0.362 | -- | 0.0883 | 23.4 | -- | -- | -- | -- |
| 37.03 | 0.285 | 14.6 | 0.229 | 0.89 | -- | -- | -- | 0.0896 | 23.4 | -- | -- | -- | -- |
| 65.7 | 0.379 | 14.6 | 0.367 | -- | 0.56 | -- | -- | 0.145 | -- | 29.05 | 5979 | -- | -- |
| 26.7 | 0.241 | 14.6 | -- | 0.969 | 0.632 | -- | -- | 0.0561 | 23 | 29.6 | 2041 | -- | -- |
| 86.68 | 0.435 | 14.6 | 0.252 | -- | -- | -- | -- | 0.0985 | -- | -- | -- | -- | -- |
| 38.41 | 0.29 | 14.6 | -- | 0.893 | -- | -- | -- | 0.0641 | 23.4 | -- | -- | -- | -- |
| 69.2 | 0.389 | 14.6 | -- | -- | 0.531 | -- | -- | 0.103 | -- | 29.05 | 5979 | -- | -- |
| 88.36 | 0.439 | 14.6 | -- | -- | -- | -- | -- | 0.0705 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 21.90 | temperature | 20 | 720 | > th | dose dependent | rect. | 3 | 18 |
| 108 | 22.54 | temperature | 20 | 720 | > th | dose dependent | no | NA | NA |
| 131 | 22.63 | temperature | 20 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 138 | 22.65 | temperature | 20 | 720 | > th | dose dependent | sin | 0 | NA |
| 175 | 22.72 | temperature | 20 | 720 | > th | dose dependent | rect. | 14 | 23 |
| 183 | 22.73 | temperature | 20 | 720 | > th | dose dependent | rect. | 10 | 23 |
| 204 | 22.77 | temperature | 30 | 720 | < th | dose dependent | rect. | 4 | 17 |
| 219 | 22.79 | temperature | 20 | 720 | > th | dose dependent | rect. | 8 | 23 |
| 246 | 22.85 | temperature | 20 | 1440 | > th | dose dependent | rect. | 16 | 3 |
| 354 | 22.94 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 2 |
| 366 | 22.94 | temperature | 10 | 720 | > th | dose dependent | rect. | 14 | 23 |
| 686 | 23.14 | temperature | 10 | 1440 | > th | dose dependent | rect. | 8 | 6 |
| 795 | 23.19 | temperature | 20 | 1440 | > th | dose dependent | rect. | 10 | 4 |
| 990 | 23.29 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 1 |