Os08g0478100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function UPF0029 family protein.
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Os08g0478100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function UPF0029 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 29.62 | 0.256 | 9.19 | 1.08 | 0.22 | -1.17 | 0.432 | 10.2 | -0.303 | 14.9 | 28.94 | 3109 | -- | -- |
| 33.32 | 0.271 | 9.4 | -0.744 | 0.141 | 0.437 | 0.265 | -- | -0.42 | 14.1 | 28.94 | 3109 | -- | -- |
| 30.23 | 0.256 | 9.19 | 1.1 | 0.221 | -1.19 | -- | 10.3 | -0.317 | 14.9 | 29.05 | 3086 | -- | -- |
| 33.58 | 0.272 | 9.4 | -0.738 | 0.138 | 0.458 | -- | -- | -0.418 | 14 | 28.94 | 3109 | -- | -- |
| 33.02 | 0.268 | 9.19 | 1.09 | -- | -1.24 | -- | 10.5 | -0.329 | -- | 29.07 | 3143 | -- | -- |
| 35.22 | 0.278 | 9.4 | -0.712 | 0.213 | -- | 0.368 | -- | -0.43 | 14.5 | -- | -- | -- | -- |
| 35.71 | 0.28 | 9.4 | -0.703 | 0.214 | -- | -- | -- | -0.428 | 14.4 | -- | -- | -- | -- |
| 33.71 | 0.272 | 9.41 | -0.771 | -- | 0.438 | -- | -- | -0.469 | -- | 24.77 | 9719 | -- | -- |
| 44.05 | 0.309 | 9.38 | -- | 0.23 | -0.297 | -- | -- | -0.333 | 14.9 | 34.3 | 47498 | -- | -- |
| 38.41 | 0.29 | 9.4 | -0.712 | -- | -- | -- | -- | -0.433 | -- | -- | -- | -- | -- |
| 48.73 | 0.327 | 9.38 | -- | 0.227 | -- | -- | -- | -0.35 | 14.5 | -- | -- | -- | -- |
| 38.69 | 0.29 | 9.35 | -- | -- | -0.596 | -- | -- | -0.18 | -- | 6.469 | 42830 | -- | -- |
| 51.78 | 0.336 | 9.39 | -- | -- | -- | -- | -- | -0.354 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 29.40 | wind | 9 | 14400 | > th | dose dependent | rect. | 22 | 16 |
| 5 | 29.79 | wind | 9 | 14400 | > th | dose dependent | rect. | 9 | 5 |
| 10 | 29.80 | wind | 9 | 14400 | > th | dose independent | rect. | 22 | 16 |
| 13 | 29.83 | wind | 9 | 14400 | > th | dose dependent | rect. | 3 | 11 |
| 14 | 29.83 | temperature | 25 | 4320 | > th | dose dependent | rect. | 22 | 11 |
| 18 | 29.87 | temperature | 25 | 4320 | > th | dose dependent | rect. | 5 | 3 |
| 30 | 30.00 | temperature | 30 | 4320 | < th | dose independent | rect. | 15 | 21 |
| 34 | 30.05 | temperature | 30 | 1440 | > th | dose independent | sin | 5 | NA |
| 38 | 30.07 | temperature | 30 | 4320 | > th | dose independent | rect. | 15 | 21 |
| 39 | 30.08 | temperature | 30 | 1440 | < th | dose independent | sin | 5 | NA |
| 40 | 30.08 | wind | 1 | 14400 | < th | dose dependent | rect. | 2 | 1 |
| 42 | 30.09 | wind | 9 | 14400 | < th | dose independent | rect. | 22 | 16 |
| 48 | 30.14 | temperature | 30 | 1440 | > th | dose independent | rect. | 16 | 23 |
| 55 | 30.18 | temperature | 30 | 1440 | < th | dose independent | rect. | 15 | 23 |
| 60 | 30.20 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 6 |
| 77 | 30.20 | temperature | 30 | 4320 | > th | dose dependent | rect. | 15 | 1 |
| 79 | 30.21 | wind | 9 | 14400 | > th | dose independent | rect. | 3 | 11 |
| 82 | 30.21 | wind | 9 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 86 | 30.24 | wind | 9 | 14400 | > th | dose independent | rect. | 5 | 9 |
| 102 | 30.28 | wind | 9 | 14400 | > th | dose independent | rect. | 9 | 5 |
| 109 | 30.29 | wind | 9 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 113 | 30.30 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 9 |
| 134 | 30.32 | temperature | 30 | 1440 | > th | dose independent | no | NA | NA |
| 136 | 30.32 | wind | 7 | 14400 | > th | dose independent | rect. | 10 | 2 |
| 249 | 30.34 | wind | 7 | 14400 | < th | dose independent | rect. | 10 | 2 |
| 276 | 30.37 | temperature | 30 | 1440 | < th | dose independent | rect. | 4 | 11 |
| 289 | 30.39 | temperature | 30 | 4320 | < th | dose independent | sin | 11 | NA |
| 291 | 30.39 | temperature | 30 | 1440 | < th | dose independent | rect. | 8 | 7 |
| 292 | 30.39 | temperature | 30 | 1440 | < th | dose independent | rect. | 3 | 15 |
| 294 | 30.39 | temperature | 30 | 1440 | < th | dose independent | rect. | 20 | 19 |
| 297 | 30.39 | temperature | 30 | 4320 | > th | dose dependent | rect. | 11 | 5 |
| 301 | 30.40 | temperature | 30 | 1440 | < th | dose independent | rect. | 5 | 13 |
| 308 | 30.41 | wind | 9 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 310 | 30.41 | temperature | 30 | 1440 | < th | dose independent | rect. | 8 | 10 |
| 314 | 30.41 | temperature | 30 | 1440 | < th | dose independent | rect. | 4 | 17 |
| 327 | 30.41 | temperature | 30 | 1440 | < th | dose independent | rect. | 20 | 22 |
| 345 | 30.41 | temperature | 30 | 4320 | > th | dose dependent | rect. | 14 | 22 |
| 360 | 30.42 | temperature | 30 | 1440 | < th | dose independent | rect. | 22 | 20 |
| 364 | 30.42 | temperature | 30 | 1440 | > th | dose independent | rect. | 12 | 23 |
| 376 | 30.43 | temperature | 30 | 1440 | < th | dose independent | rect. | 8 | 13 |
| 394 | 30.43 | temperature | 30 | 1440 | < th | dose independent | rect. | 8 | 23 |
| 395 | 30.44 | temperature | 30 | 4320 | > th | dose independent | sin | 11 | NA |
| 396 | 30.44 | temperature | 30 | 1440 | < th | dose independent | no | NA | NA |
| 444 | 30.45 | temperature | 30 | 1440 | < th | dose independent | rect. | 8 | 20 |
| 478 | 30.47 | wind | 9 | 14400 | < th | dose independent | rect. | 3 | 11 |
| 495 | 30.48 | wind | 9 | 14400 | > th | dose dependent | sin | 5 | NA |
| 522 | 30.50 | temperature | 30 | 4320 | > th | dose dependent | sin | 22 | NA |
| 607 | 30.52 | temperature | 30 | 4320 | > th | dose dependent | sin | 19 | NA |
| 610 | 30.52 | temperature | 30 | 4320 | > th | dose dependent | no | NA | NA |
| 814 | 30.57 | wind | 9 | 14400 | < th | dose independent | rect. | 7 | 7 |