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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0476100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, unclassifiable transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.29 (0.0388) R2 : 0.507
β1 : 0.153 (0.143) R2dD : 0.000977 R2D : -0.05
β2 : 1.41 (0.0905) R2dC : 0.266 R2C : 0.231
β3 : 1.62 (0.173) R2dE : 0.114 R2E : -0.0407
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -4.52 (0.529) R2dD*E : 0.094 R2D*E : -0.0236
γ1 : 1.01 (0.0857) R2dN8 : 0.217 R2N8 : 0.0811
σ : 0.713
deviance : 234.68
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_____
C
peak time of C : 0.158
E
wheather : radiation
threshold : 16.82
memory length : 1328
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 11.2
open length of G : 1.01

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
234.5 0.719 5.29 0.142 1.42 1.58 0.28 -4.49 1 0.176 17.33 1329 11.2 1
257.1 0.747 5.27 0.0544 1.35 1.26 0.366 -- 1.01 0.149 20.02 1145 12.4 0.883
234.68 0.713 5.29 0.153 1.41 1.62 -- -4.52 1.01 0.158 16.82 1328 11.2 1.01
250.23 0.737 5.3 0.0356 1.34 1.68 -- -- 0.937 23.9 4.761 1140 11.4 1.77
341.66 0.861 5.26 0.14 -- 1.69 -- -4.01 1.06 -- 20.62 1076 11.2 2.07
297.67 0.809 5.36 -0.2 1.46 -- 0.0413 -- 0.705 0.113 -- -- -- --
297.68 0.808 5.37 -0.202 1.46 -- -- -- 0.705 0.116 -- -- -- --
249.8 0.736 5.32 -0.256 -- 2.61 -- -- 0.844 -- 23.4 917 11.5 7.92
248.01 0.733 5.3 -- 1.34 2.15 -- -- 0.933 23.9 4.264 1142 11.4 1.75
431.29 0.97 5.33 -0.155 -- -- -- -- 0.726 -- -- -- -- --
298.75 0.809 5.36 -- 1.45 -- -- -- 0.727 0.108 -- -- -- --
247.93 0.733 5.3 -- -- 2.65 -- -- 0.901 -- 21.79 900 11.5 8.03
431.93 0.97 5.33 -- -- -- -- -- 0.743 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 239.92 radiation 20.0 1440 < th dose dependent rect. 11 1
2 242.50 radiation 1.0 720 < th dose dependent rect. 8 9
9 247.02 radiation 10.0 1440 > th dose independent rect. 11 1
12 249.57 radiation 20.0 1440 < th dose independent rect. 11 1
24 252.49 humidity 70.0 1440 > th dose independent rect. 11 1
30 253.28 humidity 70.0 1440 > th dose independent rect. 10 3
40 254.17 radiation 1.0 1440 < th dose independent rect. 9 3
61 255.34 humidity 80.0 1440 < th dose independent rect. 8 7
63 255.40 precipitation 0.1 14400 < th dose independent rect. 14 1
64 255.40 precipitation 0.1 14400 < th dose dependent rect. 14 1
69 255.56 humidity 80.0 720 > th dose independent rect. 11 9
75 255.84 precipitation 0.1 14400 > th dose independent rect. 14 1
76 255.84 precipitation 0.1 14400 > th dose dependent rect. 14 1
80 256.11 radiation 10.0 1440 < th dose independent rect. 11 5
84 256.30 radiation 10.0 1440 < th dose dependent rect. 11 12
85 256.31 radiation 10.0 1440 < th dose dependent rect. 11 14
90 256.33 radiation 10.0 1440 < th dose dependent rect. 11 16
91 256.34 radiation 10.0 1440 < th dose dependent rect. 11 10
100 256.51 radiation 10.0 1440 < th dose independent rect. 13 3
117 256.82 humidity 80.0 1440 > th dose independent rect. 8 8
123 256.95 temperature 20.0 720 > th dose independent rect. 19 16
131 257.11 temperature 20.0 720 > th dose independent sin 9 NA
145 257.26 humidity 90.0 14400 > th dose dependent rect. 18 1
152 257.28 humidity 70.0 720 > th dose dependent rect. 11 17
160 257.41 radiation 1.0 1440 > th dose independent rect. 9 4
181 257.57 humidity 90.0 14400 > th dose independent rect. 18 1
184 257.58 radiation 10.0 1440 < th dose dependent sin 20 NA
190 257.59 precipitation 0.1 14400 > th dose independent rect. 9 6
204 257.64 precipitation 0.1 14400 < th dose independent rect. 9 6
206 257.64 precipitation 0.1 14400 < th dose dependent rect. 9 6
215 257.75 humidity 80.0 720 > th dose independent sin 21 NA
255 258.14 humidity 80.0 720 < th dose independent rect. 11 10
258 258.17 atmosphere 1005.0 270 > th dose independent rect. 15 12
282 258.36 humidity 70.0 1440 > th dose dependent rect. 11 2
326 258.72 humidity 70.0 720 > th dose dependent sin 18 NA
385 259.12 humidity 70.0 1440 > th dose independent rect. 19 19
387 259.13 humidity 80.0 1440 < th dose independent sin 2 NA
393 259.20 humidity 80.0 720 < th dose independent sin 21 NA
394 259.21 humidity 80.0 1440 > th dose independent sin 2 NA
396 259.23 atmosphere 1005.0 720 < th dose independent rect. 16 9
416 259.28 radiation 10.0 720 > th dose independent rect. 11 19
419 259.29 humidity 90.0 14400 < th dose independent rect. 13 1
445 259.38 radiation 10.0 1440 < th dose dependent rect. 23 6
469 259.52 humidity 80.0 720 < th dose independent rect. 9 12
483 259.57 temperature 20.0 720 > th dose independent rect. 23 10
501 259.64 temperature 20.0 720 > th dose independent rect. 21 10
505 259.66 humidity 70.0 720 > th dose dependent rect. 11 9
507 259.68 radiation 10.0 1440 < th dose independent rect. 11 12
509 259.69 radiation 10.0 1440 < th dose independent rect. 11 14
513 259.71 radiation 10.0 1440 < th dose independent rect. 11 10
516 259.71 radiation 10.0 1440 < th dose independent rect. 11 16
541 259.87 humidity 70.0 1440 < th dose independent rect. 11 1
545 259.89 temperature 20.0 720 > th dose independent rect. 23 8
577 260.03 humidity 70.0 1440 > th dose independent rect. 22 16
681 260.49 humidity 90.0 4320 > th dose dependent rect. 7 2
688 260.51 atmosphere 1005.0 720 < th dose independent rect. 19 4
726 260.69 humidity 80.0 14400 > th dose dependent rect. 14 1
749 260.74 humidity 90.0 1440 < th dose dependent rect. 11 4
764 260.80 humidity 80.0 720 > th dose independent rect. 11 17
783 260.86 humidity 80.0 720 > th dose independent rect. 8 20
840 261.04 radiation 1.0 720 < th dose independent rect. 7 11
846 261.05 humidity 60.0 1440 > th dose dependent rect. 13 1
852 261.08 temperature 20.0 1440 > th dose independent rect. 20 7
920 261.29 humidity 90.0 14400 > th dose dependent rect. 15 4
947 261.34 precipitation 0.1 14400 > th dose dependent rect. 7 9
957 261.37 temperature 20.0 1440 < th dose independent rect. 20 7