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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0474500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.64 (0.0482) R2 : 0.45
β1 : -2.15 (0.175) R2dD : 0.191 R2D : 0.103
β2 : 2.08 (0.151) R2dC : 0.392 R2C : -0.189
β3 : 2.61 (0.169) R2dE : 0.506 R2E : -0.148
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.498 (0.104) R2dN8 : 0.0388 R2N8 : -0.0338
σ : 0.89
deviance : 365.15
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_____
C
peak time of C : 21.9
E
wheather : temperature
threshold : 18.83
memory length : 387
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 0.554
open length of G : 7.18

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
355.81 0.886 4.66 -2.6 1.63 1.82 -1.48 -4.02 -0.556 22.5 20.28 272 0.8 8.12
367.01 0.892 4.62 -2.35 2.02 2.53 -0.0546 -- -0.48 22 18.82 377 0.55 7.2
362.26 0.886 4.65 -2.47 1.59 1.83 -- -3.35 -0.551 22.5 20.2 269 0.705 8.05
365.15 0.89 4.64 -2.15 2.08 2.61 -- -- -0.498 21.9 18.83 387 0.554 7.18
449.51 0.987 4.63 -3.2 -- 1.9 -- -2.86 -0.714 -- 18.83 1643 0.672 7.95
446.36 0.99 4.53 -1.92 1.46 -- -1.3 -- -0.235 2.81 -- -- -- --
452.1 0.996 4.53 -1.89 1.45 -- -- -- -0.227 2.71 -- -- -- --
446.7 0.984 4.54 -2.15 -- 1.98 -- -- -0.555 -- 18.72 1725 0.424 6.83
481.73 1.02 4.58 -- 1.74 2.21 -- -- -0.216 22.2 18.9 351 0.883 6.69
575.26 1.12 4.52 -1.83 -- -- -- -- -0.19 -- -- -- -- --
546.55 1.09 4.48 -- 1.42 -- -- -- -0.0163 2.7 -- -- -- --
579.75 1.13 4.51 -- -- 1.01 -- -- -0.171 -- 18.72 1725 0.424 6.83
663.69 1.2 4.47 -- -- -- -- -- 0.0129 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 357.05 temperature 20 270 > th dose independent rect. 1 8
4 359.99 temperature 20 270 > th dose independent rect. 2 16
10 362.29 temperature 10 270 > th dose dependent rect. 3 16
12 362.78 temperature 20 270 > th dose independent rect. 12 21
14 363.39 temperature 15 270 > th dose dependent rect. 2 18
16 363.74 temperature 20 270 > th dose independent rect. 13 19
24 364.60 temperature 20 720 > th dose independent rect. 19 14
37 366.15 temperature 15 720 > th dose dependent rect. 19 14
38 366.31 temperature 10 270 > th dose dependent rect. 1 21
43 366.63 temperature 15 270 > th dose dependent rect. 11 22
65 368.23 temperature 20 720 > th dose independent sin 9 NA
94 369.85 temperature 15 720 > th dose dependent rect. 21 10
107 370.46 temperature 15 720 > th dose dependent sin 10 NA
128 371.28 temperature 15 10 > th dose dependent rect. 3 17
180 372.84 temperature 15 270 > th dose dependent rect. 1 8
187 372.98 temperature 10 720 > th dose dependent rect. 21 17
232 374.00 temperature 20 720 < th dose independent rect. 18 17
261 374.38 temperature 25 1440 < th dose dependent rect. 3 1
264 374.41 temperature 20 1440 < th dose independent rect. 23 12
274 374.55 temperature 20 30 > th dose independent rect. 3 17
310 375.03 temperature 20 1440 < th dose independent sin 9 NA
319 375.10 temperature 20 1440 < th dose independent rect. 20 8
366 375.51 temperature 15 1440 > th dose dependent rect. 3 1
374 375.58 temperature 20 1440 < th dose independent rect. 24 1
379 375.61 temperature 20 1440 > th dose independent rect. 23 2
383 375.63 temperature 20 1440 > th dose independent rect. 17 11
393 375.70 temperature 20 1440 < th dose independent rect. 23 4
429 375.91 temperature 20 1440 < th dose independent rect. 17 11
502 376.26 temperature 20 270 < th dose independent rect. 22 19
614 377.00 temperature 30 270 < th dose dependent rect. 7 20