Os08g0474400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cyclin-like F-box domain containing protein.
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Os08g0474400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cyclin-like F-box domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 337.78 | 0.864 | 3.18 | 0.254 | 0.164 | -0.293 | 0.62 | 3.15 | -0.0691 | 2.86 | 43.5 | 1627 | -- | -- |
| 345.1 | 0.865 | 3.24 | -0.185 | 0.228 | -0.608 | 0.372 | -- | -0.327 | 2.55 | 62.41 | 2504 | -- | -- |
| 338.85 | 0.857 | 3.17 | 0.223 | 0.173 | -0.285 | -- | 3.06 | -0.0599 | 1.7 | 43.48 | 1626 | -- | -- |
| 344.84 | 0.865 | 3.25 | -0.194 | 0.201 | -0.79 | -- | -- | -0.335 | 1.91 | 62.16 | 2541 | -- | -- |
| 340.66 | 0.86 | 3.18 | 0.244 | -- | -0.318 | -- | 3.29 | -0.064 | -- | 43.5 | 1647 | -- | -- |
| 353.61 | 0.882 | 3.23 | -0.165 | 0.232 | -- | 0.3 | -- | -0.247 | 1.99 | -- | -- | -- | -- |
| 353.9 | 0.881 | 3.23 | -0.173 | 0.232 | -- | -- | -- | -0.248 | 1.48 | -- | -- | -- | -- |
| 347.32 | 0.868 | 3.26 | -0.255 | -- | -0.899 | -- | -- | -0.312 | -- | 62.41 | 2504 | -- | -- |
| 346.3 | 0.867 | 3.25 | -- | 0.22 | -0.806 | -- | -- | -0.32 | 1.24 | 62.41 | 2504 | -- | -- |
| 357.2 | 0.883 | 3.23 | -0.164 | -- | -- | -- | -- | -0.243 | -- | -- | -- | -- | -- |
| 354.69 | 0.881 | 3.23 | -- | 0.229 | -- | -- | -- | -0.229 | 1.46 | -- | -- | -- | -- |
| 349.39 | 0.871 | 3.25 | -- | -- | -0.833 | -- | -- | -0.313 | -- | 62.4 | 2504 | -- | -- |
| 357.91 | 0.883 | 3.22 | -- | -- | -- | -- | -- | -0.225 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 324.88 | wind | 5 | 720 | > th | dose dependent | rect. | 2 | 3 |
| 2 | 325.15 | wind | 5 | 720 | > th | dose dependent | rect. | 2 | 5 |
| 3 | 325.21 | wind | 5 | 720 | > th | dose independent | rect. | 2 | 5 |
| 5 | 325.27 | wind | 5 | 720 | > th | dose independent | rect. | 2 | 3 |
| 7 | 326.09 | wind | 5 | 720 | > th | dose dependent | rect. | 2 | 1 |
| 13 | 326.96 | wind | 5 | 720 | > th | dose independent | rect. | 2 | 1 |
| 67 | 330.15 | wind | 5 | 720 | < th | dose independent | rect. | 1 | 7 |
| 68 | 330.16 | wind | 3 | 90 | < th | dose independent | rect. | 16 | 2 |
| 87 | 330.72 | wind | 3 | 90 | < th | dose dependent | rect. | 16 | 2 |
| 123 | 332.04 | wind | 5 | 720 | < th | dose independent | rect. | 23 | 9 |
| 135 | 332.45 | wind | 9 | 1440 | > th | dose independent | rect. | 19 | 1 |
| 136 | 332.45 | wind | 9 | 1440 | > th | dose dependent | rect. | 19 | 1 |
| 178 | 333.92 | wind | 9 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 179 | 333.92 | wind | 9 | 1440 | > th | dose dependent | rect. | 21 | 1 |
| 181 | 333.95 | wind | 9 | 1440 | > th | dose dependent | rect. | 21 | 5 |
| 196 | 334.05 | wind | 9 | 1440 | > th | dose independent | rect. | 21 | 5 |
| 239 | 335.08 | humidity | 80 | 4320 | > th | dose independent | rect. | 8 | 1 |
| 250 | 335.40 | wind | 7 | 1440 | < th | dose independent | rect. | 1 | 2 |
| 253 | 335.51 | wind | 9 | 1440 | < th | dose independent | rect. | 22 | 6 |
| 314 | 335.89 | wind | 5 | 1440 | < th | dose independent | rect. | 3 | 2 |
| 342 | 336.01 | wind | 9 | 1440 | < th | dose independent | rect. | 21 | 11 |
| 525 | 336.96 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 2 |
| 532 | 336.99 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 2 |
| 549 | 337.07 | radiation | 10 | 1440 | < th | dose independent | rect. | 16 | 2 |
| 571 | 337.19 | wind | 9 | 720 | > th | dose dependent | rect. | 9 | 1 |
| 587 | 337.27 | humidity | 80 | 4320 | < th | dose independent | rect. | 8 | 2 |
| 634 | 337.54 | temperature | 25 | 30 | > th | dose dependent | rect. | 13 | 1 |
| 635 | 337.54 | humidity | 80 | 90 | > th | dose dependent | rect. | 16 | 1 |
| 663 | 337.63 | radiation | 10 | 1440 | < th | dose independent | rect. | 16 | 6 |
| 705 | 337.65 | radiation | 10 | 1440 | < th | dose independent | rect. | 16 | 10 |
| 791 | 338.12 | atmosphere | 1005 | 90 | > th | dose dependent | rect. | 6 | 3 |
| 825 | 338.31 | wind | 7 | 14400 | < th | dose independent | rect. | 1 | 1 |
| 857 | 338.43 | wind | 7 | 1440 | > th | dose independent | sin | 12 | NA |
| 860 | 338.47 | wind | 7 | 1440 | < th | dose independent | sin | 12 | NA |
| 863 | 338.48 | wind | 7 | 1440 | > th | dose independent | rect. | 17 | 15 |
| 868 | 338.51 | wind | 7 | 1440 | > th | dose independent | rect. | 17 | 12 |
| 886 | 338.64 | radiation | 10 | 1440 | < th | dose independent | rect. | 14 | 4 |
| 887 | 338.64 | wind | 7 | 1440 | < th | dose independent | rect. | 17 | 15 |
| 893 | 338.66 | atmosphere | 1000 | 30 | > th | dose dependent | rect. | 21 | 20 |
| 900 | 338.68 | wind | 7 | 1440 | < th | dose independent | rect. | 17 | 12 |
| 920 | 338.76 | radiation | 40 | 1440 | > th | dose independent | rect. | 11 | 5 |
| 949 | 338.79 | wind | 7 | 1440 | > th | dose dependent | rect. | 17 | 16 |
| 968 | 338.85 | radiation | 10 | 1440 | < th | dose independent | rect. | 14 | 15 |
| 971 | 338.87 | radiation | 10 | 1440 | < th | dose independent | rect. | 14 | 8 |
| 976 | 338.88 | radiation | 10 | 1440 | < th | dose independent | rect. | 14 | 10 |