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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0473800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Alpha-amylase isozyme 3D precursor (EC 3.2.1.1) (1,4-alpha-D-glucan glucanohydrolase).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.2 (0.0443) R2 : 0.156
β1 : -0.00983 (0.172) R2dD : 7.32e-06 R2D : 0.000813
β2 : -- (--) R2dC : -- R2C : --
β3 : 3.73 (0.477) R2dE : 0.303 R2E : -0.0717
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 28.2 (4.18) R2dD*E : 0.233 R2D*E : -0.181
γ1 : 0.187 (0.0956) R2dN8 : 0.01 R2N8 : 0.0178
σ : 0.818
deviance : 304.81
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_____
C
peak time of C : --
E
wheather : wind
threshold : 5.473
memory length : 38
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 22.2
open length of G : 0.921

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
291.33 0.802 3.21 -0.0549 0.374 3.52 -0.999 28.7 0.202 23.3 3.598 30 22 1
323.32 0.837 3.17 -0.482 0.366 1.02 -0.731 -- 0.214 23.4 42.89 21 22 0.767
295.59 0.807 3.21 -0.0191 0.392 3.51 -- 28.2 0.2 23.1 3.608 41 22.1 0.92
325.86 0.841 3.16 -0.477 0.385 0.999 -- -- 0.207 23.2 46.29 21 22 0.784
304.81 0.818 3.2 -0.00983 -- 3.73 -- 28.2 0.187 -- 5.473 38 22.2 0.921
330.22 0.852 3.15 -0.505 0.454 -- -0.852 -- 0.278 23.2 -- -- -- --
333.3 0.855 3.15 -0.469 0.459 -- -- -- 0.282 23 -- -- -- --
333.6 0.851 3.15 -0.456 -- 1.23 -- -- 0.213 -- 48.82 15 22 0.899
331.79 0.853 3.15 -- 0.387 1.01 -- -- 0.256 23.1 49.09 18 22.2 0.94
346.42 0.87 3.14 -0.459 -- -- -- -- 0.286 -- -- -- -- --
339.11 0.861 3.14 -- 0.455 -- -- -- 0.334 23 -- -- -- --
339.04 0.858 3.14 -- -- 1.23 -- -- 0.255 -- 55.79 36 21.9 1.02
351.97 0.876 3.12 -- -- -- -- -- 0.337 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 290.69 radiation 40.0 43200 < th dose dependent rect. 23 1
2 291.45 wind 3.0 30 < th dose independent rect. 22 1
3 291.69 temperature 20.0 30 > th dose dependent rect. 22 1
4 292.02 temperature 25.0 30 > th dose independent rect. 22 1
5 292.06 wind 9.0 1440 < th dose independent rect. 23 1
6 292.06 temperature 10.0 1440 > th dose independent rect. 23 1
9 292.06 temperature 30.0 1440 < th dose independent rect. 23 1
13 292.06 humidity 50.0 1440 > th dose independent rect. 23 1
23 292.06 atmosphere 995.0 1440 > th dose independent rect. 23 1
24 292.06 radiation 1.0 1440 < th dose independent rect. 23 1
44 292.06 temperature 10.0 1440 > th dose independent rect. 24 23
47 292.06 radiation 1.0 1440 < th dose dependent rect. 23 1
52 292.09 wind 5.0 30 < th dose dependent rect. 22 1
53 292.16 humidity 80.0 30 > th dose independent rect. 22 1
55 292.22 humidity 90.0 30 < th dose independent rect. 22 1
62 292.90 precipitation 0.1 30 < th dose independent rect. 22 1
63 292.90 atmosphere 1005.0 30 > th dose dependent rect. 22 1
64 292.90 precipitation 0.1 30 < th dose dependent rect. 22 1
66 293.13 atmosphere 1005.0 30 > th dose independent rect. 22 1
71 293.27 temperature 10.0 30 > th dose independent rect. 22 1
73 293.27 temperature 30.0 30 < th dose independent rect. 22 1
74 293.27 humidity 50.0 30 > th dose independent rect. 22 1
77 293.27 atmosphere 995.0 30 > th dose independent rect. 22 1
78 293.27 atmosphere 1010.0 30 < th dose independent rect. 22 1
80 293.27 radiation 1.0 30 < th dose independent rect. 22 1
85 293.27 temperature 10.0 30 > th dose independent rect. 23 23
86 293.27 radiation 1.0 30 < th dose dependent rect. 22 1
91 293.32 atmosphere 995.0 30 > th dose dependent rect. 22 1
92 293.46 wind 1.0 30 > th dose independent rect. 22 1
93 293.47 humidity 50.0 30 > th dose dependent rect. 22 1
100 294.05 atmosphere 1015.0 30 < th dose dependent rect. 22 1
104 294.87 humidity 90.0 30 < th dose dependent rect. 22 1
108 296.40 radiation 10.0 720 < th dose independent rect. 14 15
111 296.73 wind 1.0 30 > th dose dependent rect. 22 1
112 297.14 temperature 20.0 90 > th dose independent rect. 19 10
114 297.31 radiation 10.0 720 < th dose independent rect. 14 7
116 297.42 temperature 30.0 30 < th dose dependent rect. 22 1
172 302.74 wind 9.0 30 < th dose independent rect. 23 23
183 304.16 radiation 10.0 720 < th dose dependent rect. 14 15
185 304.29 radiation 10.0 720 < th dose independent sin 15 NA
203 305.36 radiation 10.0 720 < th dose dependent rect. 14 7
210 305.90 temperature 15.0 90 > th dose dependent rect. 19 10
214 306.15 radiation 10.0 720 > th dose independent rect. 14 1
231 306.82 radiation 10.0 720 < th dose dependent rect. 8 21
241 307.05 wind 7.0 720 < th dose independent rect. 13 12
251 307.41 temperature 20.0 10 > th dose independent rect. 1 4
259 307.69 radiation 10.0 720 < th dose dependent rect. 8 13
260 307.77 radiation 10.0 720 < th dose dependent rect. 17 10
264 307.94 radiation 10.0 720 < th dose dependent rect. 24 21
269 308.05 radiation 10.0 720 < th dose independent rect. 14 1
271 308.08 wind 7.0 720 < th dose independent rect. 13 4
318 308.93 radiation 10.0 720 < th dose independent rect. 9 11
326 309.10 radiation 10.0 720 < th dose dependent sin 14 NA
328 309.17 temperature 20.0 30 > th dose dependent rect. 1 4
336 309.35 wind 7.0 720 < th dose independent rect. 13 20
343 309.50 atmosphere 1005.0 720 > th dose independent rect. 23 1
349 309.55 temperature 20.0 90 > th dose independent sin 11 NA
354 309.66 radiation 1.0 720 > th dose dependent rect. 14 17
361 309.78 radiation 1.0 720 > th dose dependent rect. 14 1
382 310.08 temperature 20.0 10 < th dose independent sin 11 NA
391 310.23 radiation 10.0 720 > th dose independent rect. 13 19
417 310.55 temperature 20.0 10 < th dose independent rect. 17 13
428 310.65 temperature 20.0 90 < th dose independent rect. 17 14
433 310.69 temperature 20.0 10 < th dose independent rect. 17 15
472 310.99 wind 5.0 10 < th dose independent rect. 23 12
489 311.09 wind 9.0 720 < th dose independent rect. 12 23
494 311.13 temperature 20.0 90 < th dose independent rect. 19 12
497 311.14 temperature 20.0 90 > th dose independent rect. 11 18
501 311.17 temperature 20.0 10 > th dose independent rect. 11 18
515 311.27 temperature 20.0 90 < th dose independent rect. 19 14
517 311.29 radiation 1.0 720 > th dose dependent rect. 14 5
529 311.32 atmosphere 1005.0 270 < th dose independent rect. 22 3
541 311.35 temperature 10.0 270 > th dose dependent rect. 17 11
550 311.39 radiation 10.0 720 < th dose dependent rect. 17 1
556 311.44 temperature 20.0 90 < th dose independent rect. 21 10
576 311.58 temperature 20.0 90 < th dose independent rect. 21 12
588 311.65 temperature 20.0 10 < th dose independent rect. 22 8
592 311.66 temperature 20.0 30 > th dose independent rect. 19 19
628 311.82 radiation 1.0 720 > th dose dependent sin 13 NA
648 311.88 radiation 10.0 1440 < th dose dependent rect. 8 7
663 311.96 radiation 10.0 1440 < th dose independent rect. 9 7
666 311.97 humidity 60.0 720 > th dose independent rect. 17 12
697 312.09 radiation 10.0 1440 < th dose independent rect. 9 15
698 312.09 temperature 20.0 10 > th dose dependent rect. 3 2
716 312.14 radiation 10.0 720 > th dose independent sin 13 NA
721 312.16 atmosphere 1005.0 720 > th dose independent rect. 21 3
728 312.18 wind 9.0 720 < th dose independent rect. 5 20
757 312.31 atmosphere 1005.0 270 < th dose independent rect. 18 8
773 312.38 radiation 10.0 720 < th dose independent rect. 24 21
775 312.39 temperature 20.0 270 > th dose independent rect. 1 1
795 312.43 radiation 10.0 720 < th dose dependent sin 23 NA
829 312.59 humidity 60.0 720 > th dose independent rect. 17 4
857 312.70 humidity 90.0 4320 > th dose independent rect. 6 1
929 312.96 radiation 10.0 720 > th dose independent rect. 14 4