Os08g0472800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cytochrome P450 family protein.
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Os08g0472800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cytochrome P450 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 230.8 | 0.714 | 10 | -0.912 | 3.45 | -1.17 | 1.68 | 0.161 | -0.59 | 9.29 | 20.29 | 106 | 17 | 18.2 |
| 230.68 | 0.707 | 10 | -0.93 | 3.45 | -1.18 | 1.69 | -- | -0.601 | 9.3 | 20.28 | 104 | 16.9 | 18.4 |
| 240.49 | 0.722 | 10 | -0.847 | 3.42 | -1.17 | -- | 0.191 | -0.592 | 9.33 | 20.22 | 104 | 16.9 | 18.4 |
| 240.42 | 0.722 | 10 | -0.868 | 3.41 | -1.19 | -- | -- | -0.588 | 9.32 | 20.3 | 110 | 16.8 | 18.4 |
| 620.41 | 1.16 | 10.3 | -0.841 | -- | -2.25 | -- | -1.14 | -0.294 | -- | 19 | 152 | 14.9 | 17.3 |
| 312 | 0.828 | 10.1 | -1.18 | 3.44 | -- | 1.64 | -- | -0.766 | 9.98 | -- | -- | -- | -- |
| 322.46 | 0.841 | 10.1 | -1.11 | 3.43 | -- | -- | -- | -0.762 | 10 | -- | -- | -- | -- |
| 437.32 | 0.974 | 10.5 | 0.169 | -- | -3.05 | -- | -- | -0.617 | -- | 19 | 358 | 13.1 | 14.2 |
| 257.07 | 0.747 | 10 | -- | 3.39 | -1.35 | -- | -- | -0.476 | 9.28 | 20.1 | 167 | 16 | 18.9 |
| 1030.73 | 1.5 | 10.1 | -1.15 | -- | -- | -- | -- | -0.764 | -- | -- | -- | -- | -- |
| 355 | 0.881 | 10 | -- | 3.43 | -- | -- | -- | -0.638 | 10 | -- | -- | -- | -- |
| 357.68 | 0.881 | 10.3 | -- | -- | -3.06 | -- | -- | -0.498 | -- | 19.8 | 346 | 13 | 14.1 |
| 1065.83 | 1.52 | 10.1 | -- | -- | -- | -- | -- | -0.636 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 235.77 | temperature | 20.0 | 90 | > th | dose independent | rect. | 17 | 18 |
| 2 | 237.67 | temperature | 20.0 | 270 | > th | dose independent | rect. | 16 | 16 |
| 4 | 238.19 | temperature | 20.0 | 270 | > th | dose independent | rect. | 15 | 19 |
| 18 | 242.43 | temperature | 20.0 | 270 | > th | dose independent | rect. | 15 | 12 |
| 71 | 251.94 | temperature | 20.0 | 270 | > th | dose independent | rect. | 15 | 8 |
| 77 | 252.60 | temperature | 20.0 | 270 | < th | dose independent | rect. | 17 | 11 |
| 81 | 252.91 | temperature | 20.0 | 270 | > th | dose independent | sin | 13 | NA |
| 85 | 253.18 | temperature | 20.0 | 90 | > th | dose independent | sin | 11 | NA |
| 149 | 256.62 | temperature | 20.0 | 270 | < th | dose dependent | rect. | 13 | 15 |
| 157 | 256.84 | temperature | 20.0 | 270 | < th | dose independent | sin | 14 | NA |
| 174 | 257.69 | temperature | 20.0 | 270 | < th | dose independent | rect. | 21 | 6 |
| 176 | 257.74 | temperature | 20.0 | 270 | < th | dose dependent | rect. | 21 | 7 |
| 204 | 258.94 | temperature | 20.0 | 720 | < th | dose independent | rect. | 12 | 9 |
| 213 | 259.21 | temperature | 20.0 | 720 | < th | dose independent | rect. | 15 | 6 |
| 223 | 259.33 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 16 | 16 |
| 241 | 259.78 | temperature | 20.0 | 90 | > th | dose independent | rect. | 17 | 6 |
| 249 | 259.94 | temperature | 20.0 | 720 | < th | dose independent | rect. | 12 | 11 |
| 279 | 260.62 | temperature | 20.0 | 30 | < th | dose independent | sin | 11 | NA |
| 281 | 260.68 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 10 | 5 |
| 299 | 261.13 | temperature | 20.0 | 270 | < th | dose dependent | sin | 15 | NA |
| 308 | 261.24 | radiation | 20.0 | 10 | < th | dose dependent | sin | 16 | NA |
| 331 | 261.77 | radiation | 10.0 | 270 | > th | dose independent | rect. | 10 | 5 |
| 338 | 261.87 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 18 | 23 |
| 340 | 261.87 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 18 | 23 |
| 343 | 261.89 | humidity | 80.0 | 270 | < th | dose independent | rect. | 20 | 20 |
| 382 | 262.48 | humidity | 90.0 | 270 | < th | dose dependent | rect. | 20 | 8 |
| 406 | 262.84 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 16 | 12 |
| 419 | 262.94 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 11 | 3 |
| 545 | 264.37 | temperature | 20.0 | 270 | < th | dose independent | rect. | 23 | 3 |
| 568 | 264.62 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 13 | 20 |
| 577 | 264.67 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 19 | 10 |
| 579 | 264.67 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 19 | 10 |
| 607 | 264.89 | humidity | 90.0 | 30 | < th | dose dependent | rect. | 23 | 7 |
| 663 | 265.27 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 15 | 7 |
| 668 | 265.29 | temperature | 20.0 | 10 | < th | dose dependent | sin | 9 | NA |
| 684 | 265.41 | humidity | 80.0 | 270 | < th | dose independent | rect. | 11 | 4 |
| 746 | 265.87 | temperature | 20.0 | 270 | > th | dose independent | rect. | 17 | 2 |
| 752 | 265.90 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 7 | 16 |
| 760 | 265.94 | temperature | 20.0 | 90 | < th | dose dependent | sin | 10 | NA |
| 859 | 266.33 | humidity | 90.0 | 270 | < th | dose dependent | rect. | 20 | 19 |
| 876 | 266.41 | radiation | 1.0 | 270 | > th | dose dependent | rect. | 11 | 3 |
| 913 | 266.62 | radiation | 10.0 | 270 | > th | dose independent | rect. | 12 | 1 |
| 928 | 266.67 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 21 | 18 |
| 929 | 266.67 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 21 | 18 |
| 943 | 266.75 | temperature | 20.0 | 720 | < th | dose dependent | rect. | 15 | 6 |
| 955 | 266.81 | wind | 5.0 | 270 | < th | dose independent | rect. | 17 | 2 |
| 985 | 266.95 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 17 | 6 |