Os08g0469100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Peptidase A1, pepsin family protein.
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Os08g0469100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Peptidase A1, pepsin family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 282.43 | 0.79 | 3.01 | 0.502 | 0.956 | 0.915 | 2.21 | 1.92 | 0.0408 | 12.9 | 7.68 | 189 | -- | -- |
| 287.36 | 0.79 | 2.98 | 0.568 | 1.14 | 1.07 | 0.668 | -- | 0.027 | 13 | 7.679 | 201 | -- | -- |
| 290.87 | 0.794 | 3.09 | 0.652 | 0.937 | 0.931 | -- | 0.58 | 0.0592 | 12.9 | 7.48 | 189 | -- | -- |
| 286.31 | 0.788 | 3.01 | 0.537 | 1.11 | 1.06 | -- | -- | 0.051 | 13.1 | 7.67 | 196 | -- | -- |
| 297.83 | 0.808 | 3.03 | 0.603 | -- | 0.203 | -- | 0.667 | 0.0256 | -- | 28.37 | 179 | -- | -- |
| 300.87 | 0.813 | 3.03 | 0.552 | 0.121 | -- | 0.432 | -- | 0.0222 | 7.73 | -- | -- | -- | -- |
| 301.29 | 0.813 | 3.03 | 0.562 | 0.131 | -- | -- | -- | 0.0206 | 6.48 | -- | -- | -- | -- |
| 296.65 | 0.806 | 3.03 | 0.587 | -- | 0.286 | -- | -- | 0.0276 | -- | 22.3 | 153 | -- | -- |
| 294.05 | 0.799 | 3 | -- | 1.08 | 1.03 | -- | -- | 0.0432 | 13 | 7.74 | 191 | -- | -- |
| 302.19 | 0.812 | 3.03 | 0.565 | -- | -- | -- | -- | 0.0234 | -- | -- | -- | -- | -- |
| 309.61 | 0.823 | 3.04 | -- | 0.139 | -- | -- | -- | -0.0419 | 6.25 | -- | -- | -- | -- |
| 305.71 | 0.817 | 3.04 | -- | -- | 0.269 | -- | -- | -0.0377 | -- | 22.3 | 153 | -- | -- |
| 310.61 | 0.823 | 3.04 | -- | -- | -- | -- | -- | -0.0393 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 268.56 | temperature | 20 | 10 | < th | dose independent | rect. | 7 | 8 |
| 9 | 268.90 | temperature | 20 | 10 | < th | dose dependent | rect. | 7 | 8 |
| 19 | 269.09 | temperature | 20 | 10 | < th | dose dependent | rect. | 7 | 5 |
| 33 | 269.45 | wind | 5 | 10 | > th | dose independent | rect. | 8 | 1 |
| 35 | 269.45 | wind | 5 | 10 | > th | dose dependent | rect. | 8 | 1 |
| 48 | 269.59 | temperature | 20 | 30 | < th | dose independent | rect. | 7 | 1 |
| 53 | 269.59 | temperature | 20 | 30 | < th | dose dependent | rect. | 7 | 1 |
| 161 | 276.55 | wind | 3 | 90 | > th | dose dependent | rect. | 6 | 1 |
| 169 | 277.52 | radiation | 30 | 10 | < th | dose dependent | rect. | 6 | 10 |
| 178 | 278.62 | wind | 1 | 90 | < th | dose dependent | rect. | 8 | 1 |
| 179 | 278.92 | humidity | 80 | 270 | < th | dose independent | rect. | 3 | 5 |
| 183 | 279.04 | humidity | 80 | 270 | < th | dose dependent | rect. | 3 | 5 |
| 185 | 279.35 | humidity | 90 | 270 | < th | dose dependent | rect. | 4 | 3 |
| 186 | 279.41 | humidity | 80 | 270 | < th | dose independent | rect. | 4 | 3 |
| 187 | 279.54 | wind | 3 | 90 | > th | dose independent | rect. | 6 | 1 |
| 197 | 280.08 | radiation | 10 | 30 | < th | dose independent | rect. | 7 | 9 |
| 202 | 280.38 | humidity | 80 | 90 | < th | dose dependent | rect. | 6 | 1 |
| 209 | 280.64 | temperature | 30 | 90 | > th | dose dependent | rect. | 12 | 3 |
| 210 | 280.80 | humidity | 80 | 720 | < th | dose dependent | rect. | 21 | 12 |
| 213 | 280.92 | wind | 5 | 10 | > th | dose independent | rect. | 24 | 9 |
| 218 | 281.15 | wind | 1 | 90 | < th | dose independent | rect. | 8 | 1 |
| 221 | 281.18 | radiation | 10 | 10 | < th | dose independent | rect. | 8 | 1 |
| 226 | 281.46 | radiation | 10 | 720 | < th | dose dependent | rect. | 9 | 15 |
| 228 | 281.54 | humidity | 80 | 1440 | < th | dose independent | rect. | 23 | 10 |
| 233 | 281.79 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 22 |
| 234 | 281.82 | humidity | 80 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 240 | 281.86 | radiation | 10 | 720 | < th | dose dependent | rect. | 12 | 12 |
| 244 | 281.93 | temperature | 30 | 90 | > th | dose dependent | rect. | 12 | 1 |
| 250 | 282.07 | wind | 5 | 10 | > th | dose dependent | rect. | 24 | 9 |
| 258 | 282.15 | atmosphere | 1010 | 270 | > th | dose independent | rect. | 12 | 1 |
| 269 | 282.29 | wind | 1 | 43200 | < th | dose dependent | rect. | 19 | 2 |
| 273 | 282.31 | radiation | 10 | 720 | < th | dose dependent | rect. | 12 | 2 |
| 274 | 282.40 | temperature | 30 | 10 | > th | dose dependent | rect. | 14 | 1 |
| 276 | 282.41 | radiation | 10 | 720 | < th | dose independent | rect. | 12 | 1 |
| 282 | 282.46 | humidity | 80 | 4320 | < th | dose dependent | rect. | 6 | 2 |
| 284 | 282.52 | humidity | 80 | 720 | > th | dose independent | rect. | 23 | 10 |
| 288 | 282.61 | atmosphere | 1010 | 720 | < th | dose independent | rect. | 7 | 5 |
| 290 | 282.63 | atmosphere | 1010 | 720 | < th | dose independent | rect. | 9 | 2 |
| 304 | 282.98 | temperature | 20 | 10 | > th | dose dependent | rect. | 14 | 23 |
| 307 | 283.04 | radiation | 10 | 720 | < th | dose independent | rect. | 12 | 11 |
| 317 | 283.19 | radiation | 40 | 10 | > th | dose independent | rect. | 14 | 1 |
| 359 | 283.22 | humidity | 80 | 1440 | > th | dose independent | rect. | 3 | 6 |
| 364 | 283.33 | radiation | 10 | 90 | < th | dose independent | rect. | 12 | 22 |
| 368 | 283.42 | atmosphere | 1005 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 369 | 283.42 | atmosphere | 1005 | 43200 | < th | dose dependent | rect. | 23 | 1 |
| 410 | 283.57 | atmosphere | 1005 | 43200 | < th | dose dependent | rect. | 13 | 12 |
| 471 | 283.68 | atmosphere | 1005 | 43200 | < th | dose dependent | sin | 16 | NA |
| 516 | 283.75 | temperature | 20 | 4320 | < th | dose independent | rect. | 24 | 1 |
| 518 | 283.75 | humidity | 70 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 626 | 283.93 | radiation | 10 | 720 | < th | dose dependent | rect. | 9 | 5 |
| 631 | 283.94 | atmosphere | 1010 | 720 | > th | dose dependent | rect. | 7 | 1 |
| 668 | 284.00 | atmosphere | 1010 | 720 | > th | dose dependent | rect. | 4 | 8 |
| 704 | 284.05 | humidity | 80 | 720 | > th | dose independent | rect. | 22 | 13 |
| 712 | 284.07 | atmosphere | 1005 | 43200 | < th | dose dependent | no | NA | NA |
| 732 | 284.08 | atmosphere | 1005 | 43200 | < th | dose dependent | rect. | 18 | 23 |
| 733 | 284.08 | atmosphere | 1005 | 43200 | < th | dose dependent | rect. | 20 | 23 |
| 896 | 284.31 | humidity | 80 | 4320 | < th | dose independent | rect. | 6 | 2 |
| 909 | 284.33 | humidity | 80 | 720 | < th | dose independent | rect. | 22 | 13 |
| 916 | 284.33 | radiation | 10 | 720 | < th | dose dependent | rect. | 3 | 21 |
| 925 | 284.35 | temperature | 20 | 4320 | > th | dose independent | rect. | 24 | 1 |
| 927 | 284.35 | radiation | 30 | 90 | < th | dose dependent | rect. | 12 | 22 |
| 940 | 284.39 | atmosphere | 1010 | 720 | > th | dose independent | rect. | 6 | 1 |
| 971 | 284.48 | radiation | 20 | 4320 | < th | dose independent | rect. | 15 | 1 |
| 999 | 284.53 | temperature | 20 | 10 | > th | dose dependent | rect. | 16 | 21 |
| 1000 | 284.54 | wind | 5 | 4320 | > th | dose independent | rect. | 9 | 2 |