Os08g0469000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Peptidase A1, pepsin family protein.
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Os08g0469000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Peptidase A1, pepsin family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 350.73 | 0.88 | 4.62 | 0.722 | 1.42 | 1.65 | 0.607 | 3.12 | 0.362 | 1.76 | 81 | 1479 | -- | -- |
| 358.25 | 0.882 | 4.61 | 0.963 | 1.33 | 1.87 | 0.787 | -- | 0.405 | 1.6 | 80.62 | 1540 | -- | -- |
| 350.51 | 0.872 | 4.61 | 0.645 | 1.36 | 1.61 | -- | 3.32 | 0.363 | 1.62 | 82 | 1562 | -- | -- |
| 359.99 | 0.884 | 4.61 | 0.854 | 1.31 | 1.82 | -- | -- | 0.396 | 1.54 | 83 | 1564 | -- | -- |
| 409.65 | 0.948 | 4.62 | 0.978 | -- | 0.985 | -- | 1.01 | 0.327 | -- | 81 | 1661 | -- | -- |
| 398.83 | 0.936 | 4.63 | 0.935 | 1.45 | -- | 0.527 | -- | 0.31 | 1.66 | -- | -- | -- | -- |
| 399.93 | 0.937 | 4.63 | 0.918 | 1.45 | -- | -- | -- | 0.307 | 1.66 | -- | -- | -- | -- |
| 416.43 | 0.955 | 4.62 | 1 | -- | 0.986 | -- | -- | 0.333 | -- | 81 | 1661 | -- | -- |
| 362.36 | 0.887 | 4.59 | -- | 1.39 | 2.09 | -- | -- | 0.531 | 0.817 | 87.99 | 2146 | -- | -- |
| 527.35 | 1.07 | 4.61 | 0.977 | -- | -- | -- | -- | 0.339 | -- | -- | -- | -- | -- |
| 422.15 | 0.961 | 4.65 | -- | 1.46 | -- | -- | -- | 0.204 | 1.68 | -- | -- | -- | -- |
| 442.24 | 0.983 | 4.64 | -- | -- | 0.986 | -- | -- | 0.22 | -- | 82 | 1677 | -- | -- |
| 552.51 | 1.1 | 4.64 | -- | -- | -- | -- | -- | 0.23 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 346.57 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 15 | 3 |
| 3 | 346.74 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 15 | 3 |
| 27 | 347.80 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 14 | 10 |
| 42 | 347.81 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 14 | 16 |
| 49 | 347.82 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 14 | 12 |
| 98 | 348.45 | temperature | 30.0 | 14400 | > th | dose independent | sin | 14 | NA |
| 119 | 348.63 | temperature | 30.0 | 14400 | < th | dose independent | sin | 14 | NA |
| 201 | 349.01 | temperature | 30.0 | 14400 | > th | dose dependent | rect. | 14 | 1 |
| 243 | 349.63 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 15 | 20 |
| 261 | 350.12 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 15 | 18 |
| 301 | 350.33 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 22 | 23 |
| 326 | 350.50 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 5 | 13 |
| 331 | 350.50 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 23 | 19 |
| 332 | 350.50 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 21 | 21 |
| 388 | 350.76 | temperature | 30.0 | 14400 | > th | dose independent | no | NA | NA |
| 485 | 350.82 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 15 | 21 |
| 488 | 350.85 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 4 | 20 |
| 490 | 350.85 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 1 | 23 |
| 519 | 350.87 | temperature | 30.0 | 14400 | < th | dose independent | no | NA | NA |
| 587 | 350.93 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 9 | 23 |
| 619 | 350.98 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 17 | 23 |
| 646 | 351.15 | humidity | 80.0 | 1440 | > th | dose independent | no | NA | NA |
| 655 | 351.22 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 3 | 23 |
| 688 | 351.44 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 17 | 23 |
| 695 | 351.51 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 22 | 22 |
| 697 | 351.54 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 19 | 23 |
| 740 | 351.70 | radiation | 40.0 | 4320 | > th | dose dependent | rect. | 14 | 19 |
| 744 | 351.72 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 10 | 23 |
| 760 | 351.77 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 10 | 23 |
| 830 | 352.13 | humidity | 80.0 | 1440 | < th | dose independent | no | NA | NA |
| 831 | 352.13 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 17 | 23 |
| 844 | 352.19 | temperature | 30.0 | 14400 | > th | dose dependent | sin | 15 | NA |
| 846 | 352.20 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 3 | 23 |
| 861 | 352.29 | humidity | 70.0 | 1440 | > th | dose dependent | no | NA | NA |
| 870 | 352.31 | humidity | 70.0 | 1440 | > th | dose dependent | sin | 14 | NA |
| 873 | 352.31 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 23 | 23 |
| 909 | 352.38 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 3 | 23 |
| 934 | 352.42 | humidity | 80.0 | 1440 | > th | dose dependent | rect. | 1 | 21 |
| 940 | 352.44 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 6 | 23 |
| 957 | 352.52 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 968 | 352.58 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 20 | 23 |
| 991 | 352.63 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 1 | 3 |
| 996 | 352.65 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 1 | 23 |