Os08g0468400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : HEC/Ndc80p family protein.
FiT-DB / Search/ Help/ Sample detail
|
Os08g0468400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : HEC/Ndc80p family protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 184.99 | 0.639 | 6.03 | 1.97 | 1.65 | 2.13 | 0.804 | -2.91 | 0.42 | 16.3 | 90.73 | 617 | 6.47 | 18.8 |
| 193.03 | 0.647 | 6.02 | 1.71 | 1.73 | 1.87 | 1.14 | -- | 0.436 | 16.6 | 90.71 | 608 | 5.56 | 20.3 |
| 185.01 | 0.634 | 6.05 | 1.99 | 1.68 | 2.23 | -- | -3.69 | 0.401 | 16.4 | 91.59 | 593 | 6.55 | 18.9 |
| 198.36 | 0.656 | 6.02 | 1.68 | 1.65 | 1.88 | -- | -- | 0.414 | 16.5 | 90.64 | 613 | 5.57 | 20 |
| 305.21 | 0.814 | 6.09 | 1.69 | -- | 1.34 | -- | -1.92 | 0.215 | -- | 84.94 | 1287 | 10.5 | 18.3 |
| 250.5 | 0.742 | 6.08 | 1.8 | 1.37 | -- | 1.18 | -- | 0.125 | 16.2 | -- | -- | -- | -- |
| 254.39 | 0.747 | 6.08 | 1.81 | 1.38 | -- | -- | -- | 0.132 | 16.2 | -- | -- | -- | -- |
| 289.96 | 0.793 | 6.03 | 1.46 | -- | 2 | -- | -- | 0.354 | -- | 83.67 | 1231 | 9.03 | 22.3 |
| 269.43 | 0.764 | 6.04 | -- | 1.69 | 2.1 | -- | -- | 0.337 | 16.8 | 89.68 | 630 | 5.38 | 20.5 |
| 357.94 | 0.884 | 6.07 | 1.75 | -- | -- | -- | -- | 0.0951 | -- | -- | -- | -- | -- |
| 340.73 | 0.863 | 6.12 | -- | 1.35 | -- | -- | -- | -0.0697 | 16.2 | -- | -- | -- | -- |
| 347.44 | 0.868 | 6.04 | -- | -- | 2.29 | -- | -- | 0.251 | -- | 82.88 | 1240 | 9.1 | 21.9 |
| 439.12 | 0.978 | 6.12 | -- | -- | -- | -- | -- | -0.0996 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 190.02 | humidity | 90 | 720 | > th | dose dependent | rect. | 7 | 18 |
| 9 | 192.75 | humidity | 90 | 720 | > th | dose dependent | rect. | 16 | 9 |
| 10 | 192.85 | humidity | 90 | 720 | > th | dose dependent | rect. | 19 | 6 |
| 21 | 193.74 | humidity | 90 | 720 | > th | dose dependent | sin | 17 | NA |
| 38 | 195.30 | humidity | 80 | 1440 | < th | dose independent | rect. | 10 | 7 |
| 55 | 196.40 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 61 | 196.98 | humidity | 90 | 720 | > th | dose dependent | rect. | 22 | 1 |
| 65 | 197.12 | humidity | 80 | 1440 | > th | dose independent | rect. | 10 | 7 |
| 67 | 197.16 | radiation | 1 | 1440 | < th | dose independent | rect. | 15 | 2 |
| 68 | 197.17 | radiation | 1 | 1440 | > th | dose independent | rect. | 15 | 2 |
| 76 | 197.51 | radiation | 1 | 1440 | < th | dose dependent | rect. | 15 | 2 |
| 83 | 197.81 | radiation | 1 | 1440 | < th | dose dependent | rect. | 10 | 20 |
| 90 | 197.99 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 17 |
| 91 | 198.04 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 109 | 198.77 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 14 |
| 111 | 198.80 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 8 |
| 114 | 198.82 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 12 |
| 126 | 199.22 | radiation | 1 | 1440 | < th | dose dependent | rect. | 10 | 17 |
| 130 | 199.26 | radiation | 1 | 1440 | < th | dose dependent | rect. | 10 | 11 |
| 134 | 199.28 | radiation | 1 | 1440 | < th | dose dependent | rect. | 10 | 15 |
| 136 | 199.31 | humidity | 80 | 1440 | < th | dose independent | rect. | 22 | 20 |
| 157 | 199.60 | radiation | 1 | 1440 | < th | dose dependent | sin | 17 | NA |
| 171 | 199.76 | radiation | 1 | 1440 | > th | dose independent | rect. | 10 | 20 |
| 191 | 199.91 | radiation | 1 | 1440 | > th | dose independent | rect. | 13 | 17 |
| 197 | 200.00 | radiation | 1 | 1440 | < th | dose independent | rect. | 10 | 20 |
| 199 | 200.08 | radiation | 1 | 1440 | < th | dose independent | rect. | 13 | 17 |
| 210 | 200.20 | radiation | 1 | 1440 | > th | dose independent | rect. | 13 | 6 |
| 226 | 200.34 | radiation | 1 | 1440 | < th | dose independent | rect. | 13 | 14 |
| 229 | 200.37 | humidity | 70 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 230 | 200.38 | radiation | 1 | 1440 | < th | dose independent | rect. | 13 | 8 |
| 248 | 200.53 | radiation | 1 | 1440 | > th | dose independent | rect. | 10 | 9 |
| 267 | 200.77 | radiation | 1 | 1440 | > th | dose independent | rect. | 10 | 7 |
| 269 | 200.78 | radiation | 1 | 1440 | < th | dose independent | rect. | 10 | 17 |
| 270 | 200.80 | radiation | 1 | 1440 | < th | dose independent | rect. | 10 | 7 |
| 271 | 200.80 | radiation | 1 | 1440 | < th | dose independent | rect. | 10 | 11 |
| 324 | 201.15 | radiation | 1 | 1440 | > th | dose independent | sin | 18 | NA |
| 342 | 201.30 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 23 |
| 364 | 201.39 | humidity | 70 | 1440 | > th | dose dependent | rect. | 10 | 20 |
| 369 | 201.42 | radiation | 1 | 1440 | < th | dose independent | sin | 18 | NA |
| 408 | 201.62 | humidity | 90 | 720 | > th | dose independent | rect. | 5 | 20 |
| 444 | 201.81 | humidity | 80 | 1440 | > th | dose independent | rect. | 23 | 19 |
| 449 | 201.85 | radiation | 1 | 4320 | < th | dose independent | rect. | 9 | 1 |
| 450 | 201.85 | radiation | 1 | 4320 | < th | dose dependent | rect. | 9 | 1 |
| 497 | 202.32 | humidity | 70 | 1440 | > th | dose dependent | rect. | 10 | 7 |
| 515 | 202.55 | humidity | 90 | 720 | < th | dose independent | rect. | 16 | 20 |
| 521 | 202.62 | humidity | 70 | 1440 | > th | dose dependent | rect. | 22 | 20 |
| 542 | 202.78 | temperature | 20 | 1440 | > th | dose dependent | rect. | 14 | 1 |
| 553 | 202.88 | radiation | 1 | 1440 | < th | dose dependent | rect. | 24 | 17 |
| 555 | 202.89 | radiation | 1 | 1440 | < th | dose dependent | rect. | 4 | 13 |
| 558 | 202.91 | radiation | 1 | 1440 | < th | dose dependent | rect. | 2 | 15 |
| 576 | 203.04 | humidity | 90 | 720 | > th | dose independent | rect. | 21 | 4 |
| 600 | 203.16 | temperature | 20 | 1440 | > th | dose dependent | rect. | 13 | 4 |
| 613 | 203.29 | temperature | 25 | 1440 | > th | dose independent | rect. | 10 | 6 |
| 618 | 203.35 | humidity | 80 | 1440 | < th | dose independent | rect. | 14 | 4 |
| 642 | 203.55 | radiation | 1 | 1440 | < th | dose dependent | rect. | 4 | 23 |
| 643 | 203.56 | radiation | 1 | 1440 | < th | dose dependent | rect. | 24 | 21 |
| 645 | 203.57 | radiation | 1 | 1440 | < th | dose dependent | rect. | 4 | 16 |
| 652 | 203.58 | radiation | 1 | 1440 | < th | dose dependent | rect. | 2 | 19 |
| 660 | 203.59 | radiation | 1 | 1440 | < th | dose dependent | rect. | 4 | 21 |
| 666 | 203.61 | radiation | 1 | 1440 | < th | dose dependent | no | NA | NA |
| 672 | 203.61 | radiation | 1 | 1440 | < th | dose dependent | rect. | 2 | 23 |
| 721 | 203.76 | humidity | 80 | 1440 | < th | dose independent | sin | 0 | NA |
| 745 | 203.82 | humidity | 90 | 720 | > th | dose independent | rect. | 17 | 8 |
| 768 | 203.96 | temperature | 25 | 1440 | < th | dose independent | rect. | 9 | 7 |
| 801 | 204.16 | humidity | 90 | 720 | > th | dose independent | rect. | 9 | 17 |
| 804 | 204.18 | humidity | 50 | 14400 | < th | dose dependent | rect. | 9 | 3 |
| 853 | 204.35 | temperature | 30 | 1440 | < th | dose dependent | rect. | 14 | 1 |
| 941 | 204.90 | humidity | 80 | 1440 | > th | dose independent | rect. | 14 | 3 |
| 944 | 204.92 | radiation | 1 | 4320 | > th | dose independent | rect. | 9 | 1 |
| 963 | 204.98 | temperature | 30 | 1440 | < th | dose dependent | rect. | 13 | 4 |
| 973 | 205.02 | humidity | 90 | 720 | > th | dose independent | sin | 15 | NA |