Os08g0468200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Nitrate reductase [NADH] 1 (EC 1.7.1.1) (NR1).
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Os08g0468200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Nitrate reductase [NADH] 1 (EC 1.7.1.1) (NR1).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 55.75 | 0.351 | 2.78 | 0.0763 | 0.1 | 2.45 | -0.197 | 5.39 | 0.0379 | 5.8 | 18.38 | 1205 | -- | -- |
| 61.79 | 0.366 | 2.72 | 0.282 | 0.077 | 0.51 | -0.433 | -- | 0.105 | 5.23 | 21.31 | 2065 | -- | -- |
| 54.74 | 0.345 | 2.78 | 0.137 | 0.0872 | 4.02 | -- | 8.7 | 0.0309 | 5.13 | 17.09 | 1130 | -- | -- |
| 62.21 | 0.367 | 2.72 | 0.271 | 0.0772 | 0.519 | -- | -- | 0.105 | 5.89 | 21.42 | 1993 | -- | -- |
| 54.85 | 0.345 | 2.81 | 0.15 | -- | 4.53 | -- | 9.76 | 0.0343 | -- | 17.1 | 1130 | -- | -- |
| 64.49 | 0.376 | 2.74 | 0.0992 | 0.0717 | -- | -0.399 | -- | 0.0217 | 5.52 | -- | -- | -- | -- |
| 64.8 | 0.377 | 2.74 | 0.0986 | 0.0785 | -- | -- | -- | 0.0238 | 7.29 | -- | -- | -- | -- |
| 62.45 | 0.368 | 2.72 | 0.268 | -- | 0.507 | -- | -- | 0.103 | -- | 21.62 | 2003 | -- | -- |
| 63.58 | 0.371 | 2.73 | -- | 0.0887 | 0.328 | -- | -- | 0.0575 | 6.78 | 23.5 | 1689 | -- | -- |
| 65.13 | 0.377 | 2.74 | 0.1 | -- | -- | -- | -- | 0.0251 | -- | -- | -- | -- | -- |
| 65.06 | 0.377 | 2.74 | -- | 0.0795 | -- | -- | -- | 0.0128 | 7.21 | -- | -- | -- | -- |
| 63.89 | 0.372 | 2.73 | -- | -- | 0.319 | -- | -- | 0.0598 | -- | 22.98 | 1855 | -- | -- |
| 65.39 | 0.377 | 2.74 | -- | -- | -- | -- | -- | 0.014 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 52.62 | temperature | 20 | 1440 | < th | dose independent | rect. | 10 | 6 |
| 8 | 52.86 | temperature | 20 | 1440 | > th | dose independent | rect. | 10 | 6 |
| 10 | 52.90 | temperature | 20 | 1440 | < th | dose dependent | rect. | 12 | 3 |
| 45 | 53.54 | temperature | 20 | 1440 | < th | dose dependent | rect. | 17 | 1 |
| 47 | 53.57 | temperature | 20 | 1440 | < th | dose dependent | rect. | 23 | 1 |
| 53 | 53.95 | temperature | 20 | 1440 | < th | dose dependent | rect. | 12 | 6 |
| 62 | 54.23 | wind | 9 | 4320 | > th | dose independent | rect. | 3 | 1 |
| 94 | 54.23 | wind | 9 | 4320 | > th | dose dependent | rect. | 3 | 1 |
| 128 | 54.39 | temperature | 20 | 1440 | < th | dose dependent | rect. | 6 | 18 |
| 133 | 54.62 | humidity | 90 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 134 | 54.65 | temperature | 20 | 1440 | < th | dose dependent | rect. | 8 | 12 |
| 136 | 54.70 | temperature | 20 | 1440 | < th | dose dependent | rect. | 10 | 10 |
| 138 | 54.71 | humidity | 90 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 148 | 54.94 | temperature | 20 | 1440 | < th | dose dependent | rect. | 14 | 6 |
| 150 | 54.96 | humidity | 90 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 153 | 55.00 | temperature | 20 | 1440 | < th | dose dependent | rect. | 10 | 14 |
| 157 | 55.03 | temperature | 20 | 1440 | < th | dose dependent | sin | 21 | NA |
| 161 | 55.05 | temperature | 20 | 1440 | < th | dose dependent | rect. | 14 | 10 |
| 171 | 55.16 | temperature | 20 | 1440 | < th | dose dependent | rect. | 19 | 1 |
| 172 | 55.17 | temperature | 20 | 1440 | < th | dose dependent | rect. | 19 | 5 |
| 174 | 55.18 | temperature | 20 | 1440 | < th | dose dependent | rect. | 6 | 15 |
| 203 | 55.50 | wind | 1 | 1440 | < th | dose dependent | rect. | 8 | 1 |
| 205 | 55.52 | wind | 1 | 1440 | < th | dose dependent | rect. | 7 | 3 |
| 207 | 55.56 | wind | 1 | 1440 | < th | dose independent | rect. | 7 | 2 |
| 232 | 55.75 | temperature | 20 | 720 | < th | dose dependent | rect. | 7 | 1 |
| 249 | 55.88 | wind | 1 | 1440 | > th | dose independent | rect. | 7 | 2 |
| 250 | 55.88 | wind | 9 | 43200 | > th | dose dependent | rect. | 3 | 1 |
| 258 | 55.92 | wind | 7 | 4320 | < th | dose independent | rect. | 6 | 1 |
| 264 | 55.96 | wind | 9 | 14400 | < th | dose independent | rect. | 4 | 5 |
| 265 | 55.96 | wind | 1 | 270 | < th | dose dependent | rect. | 7 | 2 |
| 271 | 56.03 | wind | 9 | 43200 | > th | dose independent | rect. | 3 | 3 |
| 283 | 56.09 | wind | 9 | 43200 | > th | dose dependent | rect. | 3 | 3 |
| 286 | 56.11 | wind | 9 | 14400 | < th | dose independent | rect. | 4 | 2 |
| 305 | 56.15 | wind | 9 | 14400 | < th | dose independent | rect. | 2 | 7 |
| 308 | 56.16 | wind | 9 | 43200 | < th | dose independent | rect. | 2 | 4 |
| 324 | 56.20 | wind | 9 | 43200 | > th | dose dependent | rect. | 24 | 6 |
| 338 | 56.25 | wind | 1 | 14400 | < th | dose dependent | rect. | 15 | 1 |
| 445 | 56.42 | wind | 9 | 43200 | > th | dose independent | rect. | 24 | 6 |
| 491 | 56.47 | wind | 9 | 14400 | > th | dose independent | rect. | 24 | 10 |
| 496 | 56.48 | wind | 9 | 14400 | > th | dose independent | rect. | 24 | 8 |
| 514 | 56.50 | temperature | 20 | 4320 | < th | dose dependent | rect. | 7 | 1 |
| 883 | 56.88 | wind | 1 | 14400 | < th | dose independent | rect. | 14 | 2 |