Os08g0467100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os08g0467100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 229.71 | 0.706 | 2.96 | 0.012 | 0.287 | 6.92 | -0.458 | 33.1 | -0.243 | 3.94 | 5 | 90 | 2 | 1 |
| 261.33 | 0.753 | 2.86 | 0.216 | 0.0872 | 5.06 | 0.153 | -- | -0.144 | 2.52 | 3.995 | 87 | 2.12 | 0.644 |
| 230.29 | 0.707 | 2.96 | 0.018 | 0.287 | 7.05 | -- | 33.4 | -0.241 | 4.17 | 5 | 91 | 2.02 | 1.02 |
| 245.69 | 0.73 | 3 | -0.094 | 0.151 | 2.84 | -- | -- | -0.305 | 1.27 | 4.645 | 85 | 2.27 | 0.317 |
| 234.7 | 0.714 | 2.96 | 0.0277 | -- | 7.11 | -- | 33 | -0.235 | -- | 5.003 | 91 | 2.05 | 1.02 |
| 255.39 | 0.749 | 2.95 | -0.00252 | 0.332 | -- | -0.0839 | -- | -0.248 | 4.12 | -- | -- | -- | -- |
| 255.4 | 0.748 | 2.95 | -0.00154 | 0.332 | -- | -- | -- | -0.247 | 4.16 | -- | -- | -- | -- |
| 245.42 | 0.73 | 2.95 | 0.0102 | -- | 2.8 | -- | -- | -0.229 | -- | 3.2 | 115 | 2.42 | 0.1 |
| 244.46 | 0.728 | 2.95 | -- | 0.188 | 2.75 | -- | -- | -0.212 | 1.34 | 4.579 | 95 | 2.13 | 0.45 |
| 261.37 | 0.755 | 2.95 | 0.0118 | -- | -- | -- | -- | -0.239 | -- | -- | -- | -- | -- |
| 255.4 | 0.748 | 2.95 | -- | 0.332 | -- | -- | -- | -0.247 | 4.16 | -- | -- | -- | -- |
| 242.52 | 0.725 | 2.95 | -- | -- | 2.97 | -- | -- | -0.223 | -- | 3.4 | 128 | 2.37 | 0.117 |
| 261.38 | 0.755 | 2.95 | -- | -- | -- | -- | -- | -0.24 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 229.71 | wind | 5.0 | 90 | > th | dose independent | rect. | 2 | 1 |
| 2 | 229.71 | wind | 5.0 | 90 | > th | dose dependent | rect. | 2 | 1 |
| 4 | 237.14 | temperature | 30.0 | 90 | > th | dose independent | rect. | 10 | 1 |
| 9 | 237.58 | wind | 7.0 | 270 | > th | dose dependent | rect. | 22 | 10 |
| 10 | 237.62 | wind | 7.0 | 270 | > th | dose dependent | rect. | 22 | 7 |
| 14 | 237.73 | wind | 7.0 | 270 | > th | dose independent | rect. | 22 | 10 |
| 16 | 237.75 | wind | 7.0 | 270 | > th | dose independent | rect. | 22 | 7 |
| 25 | 238.07 | temperature | 20.0 | 90 | < th | dose dependent | rect. | 2 | 1 |
| 26 | 238.12 | wind | 5.0 | 270 | > th | dose independent | rect. | 1 | 5 |
| 35 | 238.48 | wind | 5.0 | 270 | > th | dose dependent | rect. | 1 | 6 |
| 36 | 238.50 | wind | 3.0 | 720 | < th | dose independent | rect. | 17 | 2 |
| 40 | 238.86 | atmosphere | 1005.0 | 90 | < th | dose independent | rect. | 1 | 4 |
| 41 | 239.21 | temperature | 30.0 | 10 | > th | dose dependent | rect. | 12 | 1 |
| 44 | 239.60 | temperature | 30.0 | 90 | > th | dose dependent | rect. | 10 | 1 |
| 48 | 239.90 | atmosphere | 1005.0 | 270 | < th | dose independent | rect. | 1 | 1 |
| 79 | 241.14 | wind | 3.0 | 720 | < th | dose dependent | rect. | 17 | 2 |
| 81 | 241.16 | atmosphere | 1005.0 | 10 | < th | dose independent | rect. | 1 | 5 |
| 201 | 242.52 | temperature | 20.0 | 10 | < th | dose independent | rect. | 3 | 2 |
| 293 | 243.08 | wind | 1.0 | 30 | < th | dose dependent | rect. | 5 | 1 |
| 364 | 244.09 | temperature | 20.0 | 720 | < th | dose independent | rect. | 16 | 1 |
| 373 | 244.12 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 24 | 1 |
| 374 | 244.12 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 24 | 1 |
| 415 | 244.43 | atmosphere | 1010.0 | 270 | < th | dose dependent | rect. | 23 | 5 |
| 426 | 244.55 | temperature | 20.0 | 720 | < th | dose dependent | rect. | 16 | 1 |
| 435 | 244.69 | wind | 3.0 | 720 | > th | dose independent | rect. | 17 | 4 |
| 436 | 244.71 | wind | 3.0 | 90 | > th | dose dependent | rect. | 4 | 1 |
| 451 | 244.98 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 2 | 1 |
| 461 | 245.10 | temperature | 20.0 | 270 | < th | dose dependent | rect. | 24 | 1 |
| 481 | 245.37 | humidity | 90.0 | 270 | > th | dose independent | rect. | 24 | 1 |
| 506 | 245.51 | temperature | 30.0 | 10 | > th | dose dependent | sin | 7 | NA |
| 524 | 245.63 | temperature | 30.0 | 90 | > th | dose dependent | sin | 8 | NA |
| 554 | 245.81 | wind | 3.0 | 720 | > th | dose independent | rect. | 17 | 6 |
| 556 | 245.81 | atmosphere | 1005.0 | 90 | < th | dose independent | rect. | 24 | 11 |
| 564 | 245.89 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 581 | 246.01 | temperature | 30.0 | 10 | > th | dose dependent | rect. | 16 | 21 |
| 595 | 246.13 | wind | 1.0 | 30 | < th | dose dependent | rect. | 5 | 19 |
| 620 | 246.25 | atmosphere | 1005.0 | 720 | > th | dose independent | rect. | 21 | 5 |
| 630 | 246.33 | atmosphere | 1005.0 | 90 | > th | dose independent | rect. | 24 | 11 |
| 633 | 246.35 | wind | 3.0 | 90 | > th | dose independent | rect. | 4 | 1 |
| 634 | 246.35 | atmosphere | 1005.0 | 720 | > th | dose independent | rect. | 23 | 3 |
| 687 | 246.52 | atmosphere | 1005.0 | 90 | < th | dose independent | sin | 8 | NA |
| 688 | 246.52 | humidity | 60.0 | 10 | < th | dose independent | rect. | 10 | 2 |
| 768 | 246.71 | radiation | 30.0 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 784 | 246.72 | temperature | 30.0 | 90 | > th | dose independent | sin | 6 | NA |
| 791 | 246.74 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 803 | 246.74 | radiation | 10.0 | 1440 | > th | dose dependent | rect. | 5 | 1 |
| 840 | 246.81 | atmosphere | 1005.0 | 90 | < th | dose independent | rect. | 24 | 17 |
| 849 | 246.85 | wind | 1.0 | 1440 | < th | dose dependent | rect. | 14 | 1 |
| 896 | 247.01 | atmosphere | 1005.0 | 10 | > th | dose independent | rect. | 24 | 11 |
| 897 | 247.02 | atmosphere | 1005.0 | 30 | > th | dose independent | sin | 8 | NA |
| 916 | 247.02 | radiation | 30.0 | 720 | > th | dose dependent | rect. | 16 | 1 |
| 966 | 247.15 | humidity | 90.0 | 90 | > th | dose dependent | rect. | 24 | 4 |
| 977 | 247.21 | humidity | 60.0 | 10 | < th | dose independent | sin | 7 | NA |
| 983 | 247.23 | wind | 1.0 | 30 | < th | dose dependent | rect. | 5 | 10 |