Os08g0466600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os08g0466600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 287.23 | 0.796 | 4.34 | 1.99 | 1.2 | 2.26 | 0.039 | 3.47 | 1.37 | 23.3 | 12.5 | 8 | -- | -- |
| 294.7 | 0.806 | 4.4 | 1.49 | 1.2 | 2.33 | -0.712 | -- | 1.24 | 23.3 | 12.5 | 8 | -- | -- |
| 286.59 | 0.795 | 4.34 | 2 | 1.2 | 2.27 | -- | 3.52 | 1.38 | 23.3 | 13.48 | 4 | -- | -- |
| 296.76 | 0.802 | 4.4 | 1.51 | 1.2 | 2.34 | -- | -- | 1.23 | 23.3 | 13.63 | 4 | -- | -- |
| 310.49 | 0.821 | 4.35 | 1.76 | -- | 2.25 | -- | 2.54 | 1.27 | -- | 14.63 | 714 | -- | -- |
| 347.1 | 0.873 | 4.33 | 1.95 | 0.879 | -- | -0.397 | -- | 1.57 | 21.2 | -- | -- | -- | -- |
| 347.59 | 0.873 | 4.33 | 1.96 | 0.884 | -- | -- | -- | 1.57 | 21.1 | -- | -- | -- | -- |
| 310.98 | 0.821 | 4.38 | 1.41 | -- | 2.01 | -- | -- | 1.22 | -- | 17.31 | 733 | -- | -- |
| 351.63 | 0.873 | 4.46 | -- | 1.37 | 3.03 | -- | -- | 0.989 | 23.7 | 6.146 | 4 | -- | -- |
| 392.59 | 0.926 | 4.3 | 1.96 | -- | -- | -- | -- | 1.56 | -- | -- | -- | -- | -- |
| 449.12 | 0.991 | 4.38 | -- | 0.883 | -- | -- | -- | 1.35 | 21.2 | -- | -- | -- | -- |
| 357.3 | 0.88 | 4.43 | -- | -- | 2.78 | -- | -- | 0.995 | -- | 14.6 | 775 | -- | -- |
| 494.39 | 1.04 | 4.35 | -- | -- | -- | -- | -- | 1.35 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 284.86 | temperature | 20 | 10 | > th | dose dependent | rect. | 2 | 23 |
| 5 | 287.37 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 6 | 287.50 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 11 | 288.37 | temperature | 20 | 4320 | > th | dose dependent | rect. | 23 | 2 |
| 12 | 288.50 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 17 | 288.73 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 22 |
| 19 | 288.76 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 17 |
| 25 | 288.97 | temperature | 15 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 29 | 289.05 | temperature | 10 | 4320 | > th | dose dependent | rect. | 21 | 4 |
| 30 | 289.08 | temperature | 20 | 4320 | > th | dose dependent | rect. | 22 | 6 |
| 34 | 289.13 | temperature | 30 | 4320 | < th | dose dependent | rect. | 21 | 4 |
| 54 | 289.34 | temperature | 20 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 58 | 289.41 | temperature | 20 | 4320 | > th | dose dependent | rect. | 3 | 1 |
| 60 | 289.41 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 118 | 289.76 | temperature | 10 | 720 | > th | dose dependent | rect. | 20 | 22 |
| 133 | 289.84 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 207 | 290.23 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 289 | 290.71 | temperature | 20 | 720 | > th | dose dependent | sin | 6 | NA |
| 313 | 290.80 | temperature | 30 | 4320 | < th | dose dependent | sin | 11 | NA |
| 340 | 290.92 | temperature | 10 | 4320 | > th | dose dependent | sin | 11 | NA |
| 351 | 290.94 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 377 | 291.03 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 18 |
| 398 | 291.11 | temperature | 30 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 444 | 291.34 | temperature | 25 | 4320 | < th | dose independent | rect. | 21 | 12 |
| 470 | 291.44 | temperature | 25 | 4320 | > th | dose independent | rect. | 21 | 12 |
| 517 | 291.63 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 595 | 291.88 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 23 |
| 615 | 291.94 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 647 | 292.06 | temperature | 25 | 1440 | > th | dose independent | rect. | 16 | 17 |
| 665 | 292.12 | temperature | 25 | 1440 | > th | dose independent | sin | 8 | NA |
| 674 | 292.15 | temperature | 25 | 1440 | > th | dose independent | rect. | 18 | 17 |
| 757 | 292.38 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 19 |
| 772 | 292.41 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 23 |
| 790 | 292.45 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 23 |
| 810 | 292.50 | temperature | 10 | 720 | > th | dose dependent | sin | 6 | NA |
| 857 | 292.61 | temperature | 10 | 4320 | > th | dose dependent | rect. | 3 | 1 |
| 865 | 292.63 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 1 |
| 882 | 292.66 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 911 | 292.74 | temperature | 25 | 1440 | < th | dose independent | rect. | 18 | 17 |
| 917 | 292.75 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 918 | 292.75 | temperature | 30 | 4320 | < th | dose dependent | rect. | 3 | 1 |
| 927 | 292.77 | temperature | 25 | 1440 | < th | dose independent | rect. | 16 | 18 |
| 954 | 292.81 | temperature | 25 | 1440 | < th | dose independent | sin | 7 | NA |
| 970 | 292.83 | temperature | 25 | 4320 | < th | dose independent | sin | 9 | NA |