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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0466200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to KUP-related potassium transporter.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.87 (0.0625) R2 : 0.785
β1 : 5.65 (0.241) R2dD : 0.416 R2D : 0.0415
β2 : 2.5 (0.13) R2dC : 0.176 R2C : 0.164
β3 : -1.84 (0.295) R2dE : 0.0309 R2E : -0.162
β4 : 3.68 (0.517) R2dD*C : 0.0216 R2D*C : 0.0234
β5 : -21.5 (1.21) R2dD*E : 0.244 R2D*E : 0.0684
γ1 : 2.5 (0.131) R2dN8 : 0.312 R2N8 : 0.2
σ : 0.996
deviance : 449.26
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_____
C
peak time of C : 9.51
E
wheather : radiation
threshold : 0.9998
memory length : 4320
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 18
open length of G : 11.2

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
449.26 0.996 5.87 5.65 2.5 -1.84 3.68 -21.5 2.5 9.51 0.9998 4320 18 11.2
652.98 1.19 5.83 5.49 2.58 -2.7 3.81 -- 2.52 8.99 1.034 47520 18.1 10.9
471.59 1.01 5.82 5.62 2.42 -1.83 -- -21.5 2.56 9.17 0.9949 4331 18 11.2
665.07 1.2 5.83 4.52 2.61 -2.44 -- -- 2.51 9.13 1.019 47520 18.1 10.8
764.02 1.29 5.87 6.11 -- -2.9 -- -21.3 2.73 -- 0.8933 4342 18.1 11.3
762.79 1.29 5.34 3.99 2.49 -- 3.62 -- 2.88 9.14 -- -- -- --
808.93 1.33 5.34 4.12 2.48 -- -- -- 2.88 9.1 -- -- -- --
950.23 1.44 5.42 4.15 -- -1.39 -- -- 2.86 -- 1.019 47520 18.1 10.8
527.29 1.07 5.76 -- 2.73 -3.94 -- -- 1.11 9.37 0.3599 47520 19.8 11
1164.5 1.59 5.41 4.11 -- -- -- -- 2.9 -- -- -- -- --
1255.54 1.66 5.44 -- 2.49 -- -- -- 2.43 8.97 -- -- -- --
881.58 1.38 5.81 -- -- -4.09 -- -- 1.2 -- 0.17 47520 20 11.4
1610.23 1.87 5.51 -- -- -- -- -- 2.44 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 391.94 temperature 20 14400 < th dose dependent rect. 24 1
2 394.89 temperature 20 14400 < th dose dependent rect. 23 3
5 395.95 radiation 1 14400 < th dose dependent rect. 1 4
26 400.32 temperature 20 14400 < th dose dependent rect. 18 12
33 400.65 temperature 20 14400 < th dose dependent sin 11 NA
72 401.93 radiation 1 14400 < th dose dependent rect. 22 7
191 405.31 temperature 20 14400 > th dose independent rect. 6 1
209 405.79 temperature 20 14400 > th dose independent rect. 3 2
214 405.89 temperature 20 14400 < th dose independent rect. 3 2
228 406.25 temperature 20 14400 < th dose independent rect. 3 4
248 406.71 temperature 20 14400 > th dose independent rect. 3 4
261 407.13 temperature 20 14400 < th dose independent rect. 6 1
268 407.42 temperature 20 14400 < th dose dependent no NA NA
296 409.07 humidity 60 43200 < th dose independent rect. 10 1
302 409.60 temperature 20 14400 < th dose dependent rect. 4 23
399 416.19 humidity 60 43200 < th dose dependent rect. 10 1
478 422.40 humidity 60 43200 < th dose independent rect. 20 16
479 422.50 humidity 60 43200 < th dose independent rect. 2 10
480 422.51 humidity 60 43200 < th dose independent rect. 24 12
489 422.75 humidity 60 43200 < th dose independent rect. 6 6
510 423.70 radiation 10 43200 < th dose independent rect. 5 1
516 424.02 radiation 1 43200 < th dose independent rect. 10 2
517 424.02 radiation 1 43200 < th dose dependent rect. 10 2
528 424.41 radiation 10 43200 < th dose independent rect. 3 3
531 424.42 radiation 10 43200 < th dose independent rect. 24 6
545 424.74 temperature 20 14400 < th dose independent sin 6 NA
548 424.75 radiation 10 43200 < th dose independent rect. 19 11
562 425.24 humidity 60 43200 > th dose independent rect. 2 9
569 425.51 radiation 1 43200 > th dose independent rect. 10 2
598 426.40 radiation 10 43200 < th dose independent rect. 17 3
607 426.55 radiation 10 43200 < th dose independent rect. 17 9
616 426.81 temperature 20 14400 > th dose independent sin 6 NA
678 429.25 radiation 40 43200 < th dose independent rect. 15 5
682 429.33 radiation 40 43200 < th dose independent rect. 15 15
700 429.64 radiation 40 43200 < th dose independent rect. 15 11
711 429.98 radiation 1 43200 < th dose dependent rect. 7 7
732 430.77 radiation 1 43200 < th dose independent rect. 8 5
735 431.05 radiation 1 43200 > th dose independent rect. 8 5
773 432.75 temperature 20 43200 < th dose independent rect. 22 1
784 433.24 radiation 1 43200 < th dose dependent rect. 6 3
816 434.69 wind 1 43200 < th dose dependent rect. 19 11
823 434.93 humidity 90 43200 > th dose dependent rect. 2 1
838 435.69 temperature 20 43200 > th dose independent rect. 22 1
990 439.87 radiation 20 43200 > th dose dependent rect. 16 15