Os08g0465400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os08g0465400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 160.63 | 0.595 | 6.03 | 0.665 | 1.35 | -0.0329 | 0.0163 | 5.28 | -0.00761 | 21.7 | 1.01 | 1436 | -- | -- |
| 185.61 | 0.639 | 6.11 | -0.136 | 0.914 | -0.462 | -0.165 | -- | -0.199 | 20.8 | 1.01 | 1436 | -- | -- |
| 160.64 | 0.59 | 6.03 | 0.664 | 1.35 | -0.0328 | -- | 5.28 | -0.0076 | 21.7 | 1.01 | 1436 | -- | -- |
| 185.7 | 0.639 | 6.11 | -0.13 | 0.917 | -0.459 | -- | -- | -0.199 | 20.8 | 1.01 | 1436 | -- | -- |
| 210.41 | 0.679 | 6.08 | -0.121 | -- | -0.911 | -- | 0.259 | -0.197 | -- | 1.01 | 1436 | -- | -- |
| 190.82 | 0.648 | 6.12 | -0.157 | 1.37 | -- | -0.106 | -- | -0.214 | 21.8 | -- | -- | -- | -- |
| 190.87 | 0.647 | 6.12 | -0.153 | 1.37 | -- | -- | -- | -0.214 | 21.8 | -- | -- | -- | -- |
| 210.85 | 0.679 | 6.08 | -0.123 | -- | -0.91 | -- | -- | -0.198 | -- | 1.01 | 1436 | -- | -- |
| 186.15 | 0.639 | 6.1 | -- | 0.912 | -0.466 | -- | -- | -0.184 | 20.8 | 1.01 | 1436 | -- | -- |
| 303.4 | 0.814 | 6.08 | -0.139 | -- | -- | -- | -- | -0.215 | -- | -- | -- | -- | -- |
| 191.48 | 0.647 | 6.12 | -- | 1.37 | -- | -- | -- | -0.197 | 21.8 | -- | -- | -- | -- |
| 211.25 | 0.679 | 6.08 | -- | -- | -0.91 | -- | -- | -0.184 | -- | 1.01 | 1436 | -- | -- |
| 303.91 | 0.814 | 6.08 | -- | -- | -- | -- | -- | -0.199 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 158.16 | humidity | 90 | 30 | < th | dose independent | rect. | 9 | 23 |
| 2 | 158.66 | humidity | 90 | 30 | > th | dose independent | rect. | 3 | 23 |
| 4 | 159.14 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 23 |
| 5 | 159.66 | radiation | 1 | 1440 | < th | dose independent | rect. | 18 | 23 |
| 6 | 159.72 | radiation | 1 | 1440 | > th | dose independent | rect. | 18 | 23 |
| 7 | 159.91 | humidity | 80 | 90 | > th | dose dependent | rect. | 10 | 19 |
| 8 | 160.10 | humidity | 90 | 10 | < th | dose independent | rect. | 5 | 23 |
| 9 | 160.15 | humidity | 80 | 90 | > th | dose dependent | rect. | 7 | 22 |
| 10 | 160.26 | radiation | 1 | 1440 | > th | dose independent | rect. | 13 | 22 |
| 12 | 160.45 | radiation | 1 | 1440 | < th | dose dependent | rect. | 22 | 19 |
| 14 | 160.47 | radiation | 1 | 1440 | < th | dose dependent | rect. | 4 | 13 |
| 16 | 160.49 | radiation | 1 | 1440 | < th | dose dependent | rect. | 1 | 16 |
| 21 | 160.50 | humidity | 90 | 90 | > th | dose independent | rect. | 7 | 22 |
| 30 | 160.70 | radiation | 1 | 1440 | > th | dose independent | no | NA | NA |
| 31 | 160.70 | radiation | 1 | 1440 | > th | dose independent | rect. | 4 | 15 |
| 89 | 160.82 | radiation | 1 | 1440 | > th | dose independent | sin | 1 | NA |
| 90 | 160.83 | humidity | 90 | 30 | > th | dose independent | rect. | 20 | 18 |
| 94 | 160.84 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 23 |
| 101 | 160.94 | radiation | 1 | 1440 | < th | dose independent | rect. | 4 | 13 |
| 102 | 160.94 | radiation | 1 | 1440 | < th | dose independent | rect. | 22 | 19 |
| 130 | 161.07 | radiation | 1 | 1440 | < th | dose independent | rect. | 13 | 22 |
| 137 | 161.12 | radiation | 1 | 1440 | < th | dose dependent | sin | 0 | NA |
| 142 | 161.22 | humidity | 80 | 1440 | > th | dose independent | rect. | 18 | 1 |
| 145 | 161.26 | radiation | 1 | 1440 | > th | dose independent | rect. | 7 | 23 |
| 147 | 161.29 | humidity | 90 | 30 | > th | dose independent | rect. | 3 | 11 |
| 153 | 161.37 | radiation | 1 | 1440 | < th | dose independent | sin | 1 | NA |
| 154 | 161.38 | humidity | 90 | 90 | > th | dose independent | rect. | 10 | 19 |
| 157 | 161.43 | humidity | 90 | 30 | < th | dose independent | sin | 5 | NA |
| 159 | 161.44 | radiation | 1 | 1440 | < th | dose independent | rect. | 4 | 16 |
| 163 | 161.45 | humidity | 90 | 30 | > th | dose independent | rect. | 3 | 9 |
| 166 | 161.45 | radiation | 1 | 1440 | < th | dose independent | rect. | 4 | 19 |
| 209 | 161.48 | radiation | 1 | 1440 | < th | dose independent | no | NA | NA |
| 223 | 161.50 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 23 |
| 233 | 161.57 | humidity | 80 | 30 | > th | dose dependent | rect. | 21 | 16 |
| 253 | 161.63 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 23 |
| 255 | 161.67 | radiation | 1 | 1440 | < th | dose dependent | rect. | 6 | 23 |
| 262 | 161.71 | radiation | 1 | 1440 | < th | dose dependent | rect. | 4 | 21 |
| 268 | 161.72 | radiation | 1 | 1440 | < th | dose dependent | rect. | 4 | 19 |
| 275 | 161.73 | radiation | 1 | 1440 | < th | dose dependent | no | NA | NA |
| 288 | 161.73 | radiation | 1 | 1440 | < th | dose dependent | rect. | 24 | 23 |
| 311 | 161.77 | humidity | 90 | 30 | > th | dose independent | rect. | 1 | 23 |
| 324 | 161.88 | humidity | 80 | 1440 | < th | dose independent | rect. | 18 | 1 |
| 325 | 161.88 | humidity | 90 | 30 | > th | dose independent | rect. | 11 | 21 |
| 327 | 161.88 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 23 |
| 363 | 162.01 | humidity | 90 | 30 | > th | dose independent | no | NA | NA |
| 370 | 162.01 | humidity | 90 | 30 | > th | dose independent | rect. | 13 | 23 |
| 375 | 162.02 | humidity | 90 | 30 | > th | dose independent | rect. | 23 | 23 |
| 382 | 162.09 | humidity | 90 | 30 | < th | dose independent | no | NA | NA |
| 384 | 162.10 | humidity | 90 | 30 | < th | dose independent | rect. | 3 | 23 |
| 389 | 162.15 | humidity | 90 | 30 | < th | dose independent | rect. | 11 | 23 |
| 391 | 162.16 | radiation | 1 | 1440 | < th | dose independent | rect. | 7 | 23 |
| 393 | 162.20 | humidity | 90 | 30 | > th | dose independent | sin | 5 | NA |
| 418 | 162.25 | humidity | 90 | 720 | > th | dose dependent | rect. | 7 | 15 |
| 443 | 162.32 | humidity | 90 | 90 | > th | dose independent | rect. | 23 | 15 |
| 453 | 162.34 | humidity | 90 | 30 | > th | dose independent | rect. | 3 | 21 |
| 465 | 162.40 | humidity | 90 | 10 | < th | dose independent | rect. | 15 | 23 |
| 470 | 162.44 | humidity | 90 | 30 | > th | dose independent | rect. | 24 | 12 |
| 472 | 162.45 | humidity | 90 | 10 | < th | dose independent | rect. | 18 | 23 |
| 548 | 162.78 | humidity | 90 | 10 | < th | dose independent | rect. | 20 | 23 |
| 631 | 163.38 | humidity | 90 | 10 | < th | dose independent | rect. | 20 | 18 |
| 648 | 163.51 | humidity | 90 | 30 | > th | dose independent | rect. | 3 | 19 |
| 650 | 163.52 | radiation | 1 | 1440 | < th | dose dependent | rect. | 15 | 1 |
| 654 | 163.53 | humidity | 90 | 10 | < th | dose independent | rect. | 20 | 20 |
| 712 | 163.86 | humidity | 90 | 10 | < th | dose independent | rect. | 20 | 16 |
| 728 | 163.93 | temperature | 15 | 90 | > th | dose independent | rect. | 4 | 23 |
| 745 | 164.02 | humidity | 90 | 30 | < th | dose independent | rect. | 13 | 23 |
| 754 | 164.05 | humidity | 80 | 720 | > th | dose dependent | rect. | 1 | 21 |
| 760 | 164.09 | radiation | 1 | 1440 | > th | dose independent | sin | 13 | NA |
| 796 | 164.22 | humidity | 90 | 30 | < th | dose independent | rect. | 23 | 23 |
| 861 | 164.52 | humidity | 80 | 30 | > th | dose dependent | rect. | 3 | 23 |
| 922 | 164.93 | humidity | 90 | 30 | < th | dose independent | rect. | 1 | 23 |
| 928 | 164.99 | humidity | 90 | 720 | < th | dose independent | rect. | 19 | 21 |
| 967 | 165.14 | humidity | 80 | 30 | > th | dose dependent | rect. | 1 | 12 |
| 968 | 165.15 | radiation | 1 | 1440 | < th | dose independent | sin | 13 | NA |
| 971 | 165.16 | humidity | 80 | 30 | > th | dose dependent | rect. | 3 | 10 |