Os08g0465300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os08g0465300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 210.69 | 0.682 | 9.18 | -0.14 | 1.17 | 0.168 | 1.37 | -6.44 | 0.155 | 22.9 | 2.085 | 1452 | -- | -- |
| 238.62 | 0.719 | 9.2 | -0.75 | 1.15 | 1.45 | 1.79 | -- | 0.135 | 22.9 | 0.2595 | 1495 | -- | -- |
| 212.85 | 0.679 | 9.19 | -0.203 | 1.18 | 0.105 | -- | -6.28 | 0.141 | 22.9 | 2.109 | 1387 | -- | -- |
| 239.02 | 0.72 | 9.25 | -0.815 | 0.898 | 1.61 | -- | -- | 0.0878 | 22.2 | 0.2788 | 1557 | -- | -- |
| 253.21 | 0.745 | 9.28 | -1.15 | -- | 0.939 | -- | 0.418 | -0.0938 | -- | 2.109 | 1387 | -- | -- |
| 254.11 | 0.747 | 9.31 | -1.15 | 1.22 | -- | 1.03 | -- | -0.118 | 23 | -- | -- | -- | -- |
| 258.65 | 0.753 | 9.31 | -1.19 | 1.21 | -- | -- | -- | -0.122 | 23 | -- | -- | -- | -- |
| 254.32 | 0.746 | 9.28 | -1.14 | -- | 0.941 | -- | -- | -0.0919 | -- | 2.109 | 1387 | -- | -- |
| 253.16 | 0.741 | 9.24 | -- | 0.859 | 2.05 | -- | -- | 0.164 | 21.9 | 9.071e-05 | 1561 | -- | -- |
| 350.06 | 0.874 | 9.28 | -1.16 | -- | -- | -- | -- | -0.113 | -- | -- | -- | -- | -- |
| 295.8 | 0.805 | 9.28 | -- | 1.2 | -- | -- | -- | 0.0105 | 22.9 | -- | -- | -- | -- |
| 286.37 | 0.788 | 9.24 | -- | -- | 2.63 | -- | -- | 0.163 | -- | 2.38e-07 | 1597 | -- | -- |
| 385.57 | 0.917 | 9.25 | -- | -- | -- | -- | -- | 0.016 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 209.98 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 23 |
| 2 | 210.53 | radiation | 1 | 1440 | > th | dose independent | sin | 1 | NA |
| 3 | 210.60 | radiation | 1 | 1440 | < th | dose independent | rect. | 18 | 23 |
| 4 | 210.63 | radiation | 1 | 1440 | < th | dose dependent | rect. | 22 | 19 |
| 6 | 210.64 | radiation | 1 | 1440 | > th | dose independent | rect. | 18 | 23 |
| 9 | 210.67 | radiation | 1 | 1440 | < th | dose dependent | rect. | 4 | 13 |
| 10 | 210.67 | radiation | 1 | 1440 | < th | dose dependent | rect. | 1 | 16 |
| 11 | 210.68 | radiation | 1 | 1440 | < th | dose independent | sin | 1 | NA |
| 16 | 210.81 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 12 |
| 17 | 210.83 | radiation | 1 | 1440 | > th | dose independent | rect. | 5 | 12 |
| 21 | 210.90 | radiation | 1 | 1440 | < th | dose independent | rect. | 22 | 19 |
| 22 | 210.91 | radiation | 1 | 1440 | < th | dose independent | rect. | 1 | 16 |
| 30 | 210.95 | radiation | 1 | 1440 | < th | dose dependent | sin | 0 | NA |
| 43 | 211.08 | radiation | 1 | 1440 | > th | dose independent | rect. | 13 | 23 |
| 46 | 211.14 | radiation | 1 | 1440 | > th | dose independent | rect. | 7 | 23 |
| 47 | 211.19 | radiation | 1 | 1440 | < th | dose dependent | rect. | 7 | 23 |
| 70 | 211.39 | radiation | 1 | 1440 | < th | dose independent | rect. | 13 | 23 |
| 71 | 211.40 | radiation | 1 | 1440 | > th | dose independent | no | NA | NA |
| 128 | 211.52 | radiation | 1 | 1440 | < th | dose independent | rect. | 7 | 23 |
| 131 | 211.53 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 18 |
| 137 | 211.55 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 21 |
| 148 | 211.59 | radiation | 1 | 1440 | < th | dose independent | rect. | 1 | 22 |
| 171 | 211.62 | radiation | 1 | 1440 | < th | dose independent | no | NA | NA |
| 195 | 211.90 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 23 |
| 202 | 212.03 | radiation | 1 | 1440 | < th | dose dependent | rect. | 7 | 19 |
| 203 | 212.04 | radiation | 1 | 1440 | < th | dose dependent | rect. | 7 | 16 |
| 207 | 212.05 | radiation | 1 | 1440 | < th | dose dependent | rect. | 7 | 13 |
| 209 | 212.05 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 23 |
| 215 | 212.10 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 23 |
| 217 | 212.13 | radiation | 1 | 1440 | < th | dose dependent | rect. | 4 | 19 |
| 220 | 212.13 | radiation | 1 | 1440 | < th | dose dependent | rect. | 22 | 22 |
| 222 | 212.14 | radiation | 1 | 1440 | < th | dose dependent | rect. | 4 | 16 |
| 232 | 212.15 | radiation | 1 | 1440 | < th | dose dependent | no | NA | NA |
| 258 | 212.18 | radiation | 1 | 1440 | < th | dose dependent | rect. | 7 | 10 |
| 319 | 212.55 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 23 |
| 451 | 214.38 | humidity | 80 | 1440 | < th | dose independent | rect. | 9 | 3 |
| 477 | 214.82 | humidity | 80 | 10 | > th | dose dependent | rect. | 3 | 12 |
| 478 | 214.90 | humidity | 90 | 10 | < th | dose independent | rect. | 20 | 20 |
| 491 | 215.18 | humidity | 80 | 1440 | > th | dose independent | rect. | 9 | 3 |
| 498 | 215.30 | humidity | 90 | 30 | > th | dose independent | rect. | 3 | 13 |
| 501 | 215.31 | humidity | 90 | 30 | > th | dose independent | rect. | 3 | 11 |
| 522 | 215.70 | radiation | 1 | 1440 | < th | dose dependent | rect. | 15 | 2 |
| 534 | 215.91 | humidity | 90 | 30 | < th | dose independent | sin | 3 | NA |
| 555 | 216.25 | radiation | 1 | 1440 | > th | dose independent | rect. | 10 | 2 |
| 561 | 216.28 | humidity | 80 | 90 | > th | dose dependent | rect. | 10 | 19 |
| 584 | 216.52 | humidity | 90 | 30 | > th | dose independent | rect. | 3 | 9 |
| 615 | 216.86 | humidity | 90 | 720 | > th | dose dependent | rect. | 7 | 15 |
| 620 | 216.94 | humidity | 80 | 90 | > th | dose dependent | rect. | 7 | 22 |
| 624 | 216.99 | humidity | 90 | 30 | > th | dose independent | rect. | 3 | 19 |
| 652 | 217.26 | humidity | 80 | 1440 | < th | dose independent | rect. | 6 | 7 |
| 712 | 217.66 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 12 |
| 714 | 217.67 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 7 |
| 715 | 217.67 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 10 |
| 734 | 217.74 | humidity | 80 | 10 | > th | dose dependent | sin | 3 | NA |
| 737 | 217.78 | humidity | 70 | 1440 | > th | dose dependent | rect. | 9 | 3 |
| 742 | 217.83 | radiation | 1 | 1440 | > th | dose independent | sin | 13 | NA |
| 767 | 218.12 | radiation | 1 | 1440 | < th | dose independent | sin | 13 | NA |
| 777 | 218.20 | humidity | 80 | 10 | > th | dose dependent | rect. | 2 | 21 |
| 789 | 218.29 | radiation | 1 | 1440 | < th | dose independent | rect. | 15 | 1 |
| 800 | 218.38 | radiation | 1 | 1440 | > th | dose independent | rect. | 15 | 1 |
| 843 | 218.64 | radiation | 1 | 1440 | < th | dose independent | rect. | 10 | 2 |
| 845 | 218.64 | radiation | 1 | 1440 | < th | dose dependent | rect. | 10 | 2 |
| 858 | 218.72 | humidity | 80 | 1440 | < th | dose independent | sin | 4 | NA |
| 860 | 218.72 | humidity | 80 | 10 | > th | dose dependent | rect. | 24 | 15 |
| 884 | 218.79 | humidity | 60 | 720 | > th | dose dependent | rect. | 24 | 19 |
| 905 | 219.01 | humidity | 90 | 30 | > th | dose independent | sin | 3 | NA |
| 911 | 219.02 | humidity | 50 | 720 | > th | dose dependent | rect. | 24 | 22 |
| 925 | 219.12 | humidity | 80 | 10 | > th | dose dependent | rect. | 24 | 23 |
| 959 | 219.40 | humidity | 80 | 1440 | > th | dose independent | rect. | 6 | 7 |
| 977 | 219.55 | temperature | 15 | 90 | > th | dose independent | rect. | 5 | 21 |