Os08g0465000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Homeobox domain containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os08g0465000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Homeobox domain containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 296.53 | 0.809 | 4.08 | 1.29 | 1 | -1.56 | 0.747 | 1.51 | 0.302 | 0.978 | 25.7 | 1408 | -- | -- |
| 298.76 | 0.805 | 4.12 | 0.843 | 0.983 | -1.46 | 0.852 | -- | 0.209 | 0.978 | 25.7 | 1417 | -- | -- |
| 298.84 | 0.805 | 4.07 | 1.31 | 0.998 | -1.57 | -- | 1.68 | 0.313 | 0.978 | 25.74 | 1408 | -- | -- |
| 301.42 | 0.809 | 4.13 | 0.802 | 0.988 | -1.44 | -- | -- | 0.146 | 0.978 | 25.7 | 1417 | -- | -- |
| 329.61 | 0.85 | 4.18 | 0.393 | -- | -0.876 | -- | -0.607 | -0.111 | -- | 25.8 | 1585 | -- | -- |
| 363.49 | 0.894 | 4.24 | 0.336 | 0.878 | -- | 0.729 | -- | -0.337 | 0.767 | -- | -- | -- | -- |
| 365.75 | 0.896 | 4.24 | 0.309 | 0.876 | -- | -- | -- | -0.34 | 0.78 | -- | -- | -- | -- |
| 331.13 | 0.851 | 4.17 | 0.531 | -- | -0.891 | -- | -- | -0.0715 | -- | 25.7 | 1417 | -- | -- |
| 316.82 | 0.829 | 4.14 | -- | 1.06 | -1.3 | -- | -- | 0.0936 | 1.08 | 25.5 | 1380 | -- | -- |
| 413.73 | 0.95 | 4.23 | 0.341 | -- | -- | -- | -- | -0.324 | -- | -- | -- | -- | -- |
| 368.27 | 0.898 | 4.25 | -- | 0.881 | -- | -- | -- | -0.375 | 0.796 | -- | -- | -- | -- |
| 338.49 | 0.86 | 4.18 | -- | -- | -0.862 | -- | -- | -0.138 | -- | 25.7 | 1417 | -- | -- |
| 416.8 | 0.953 | 4.24 | -- | -- | -- | -- | -- | -0.362 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 292.54 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 17 | 1 |
| 2 | 292.57 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 12 | 21 |
| 3 | 292.94 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 4 | 293.03 | wind | 9.0 | 43200 | > th | dose independent | rect. | 17 | 4 |
| 7 | 293.39 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 20 | 22 |
| 11 | 293.66 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 13 | 293.73 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 17 | 4 |
| 15 | 294.05 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 12 |
| 19 | 294.37 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 22 | 294.59 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 29 | 294.98 | wind | 9.0 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 35 | 295.25 | wind | 7.0 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 52 | 296.04 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 12 | 9 |
| 68 | 296.22 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 17 | 6 |
| 83 | 296.50 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 4 | 23 |
| 105 | 296.84 | wind | 7.0 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 132 | 297.28 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 15 | 7 |
| 156 | 297.59 | temperature | 20.0 | 1440 | > th | dose dependent | sin | 18 | NA |
| 171 | 297.75 | temperature | 25.0 | 1440 | > th | dose independent | sin | 17 | NA |
| 208 | 298.08 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 227 | 298.23 | temperature | 10.0 | 720 | > th | dose dependent | no | NA | NA |
| 231 | 298.26 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 260 | 298.51 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 1 | 23 |
| 261 | 298.52 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 13 | 14 |
| 264 | 298.55 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 15 | 7 |
| 289 | 298.73 | temperature | 25.0 | 1440 | < th | dose independent | sin | 17 | NA |
| 294 | 298.74 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 14 | 9 |
| 307 | 298.82 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 13 | 11 |
| 327 | 298.90 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 24 | 21 |
| 342 | 299.00 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 13 | 18 |
| 351 | 299.03 | wind | 9.0 | 43200 | > th | dose independent | rect. | 18 | 12 |
| 442 | 299.43 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 19 | 2 |
| 452 | 299.48 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 17 | 8 |
| 556 | 299.91 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 15 | 21 |
| 611 | 300.07 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 1 | 22 |
| 648 | 300.20 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 19 | 8 |
| 658 | 300.22 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 12 | 19 |
| 739 | 300.47 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 10 | 21 |
| 757 | 300.51 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 1 | 22 |
| 790 | 300.57 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 791 | 300.57 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 836 | 300.69 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 5 | 23 |
| 889 | 300.79 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 976 | 301.02 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 7 | 23 |
| 978 | 301.03 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 5 | 19 |
| 999 | 301.08 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 5 | 21 |