Os08g0463100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os08g0463100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 94.31 | 0.456 | 9.71 | -1.03 | 0.819 | 1.98 | 1.42 | 1.43 | -0.65 | 9.76 | 18.97 | 708 | -- | -- |
| 96.81 | 0.458 | 9.72 | -1.17 | 0.855 | 2.01 | 1.35 | -- | -0.651 | 9.27 | 19.78 | 648 | -- | -- |
| 96.26 | 0.46 | 9.74 | -0.947 | 0.535 | 2.21 | -- | 1.52 | -0.676 | 3.46 | 19.21 | 707 | -- | -- |
| 98.39 | 0.465 | 9.77 | -1.2 | 0.549 | 2.27 | -- | -- | -0.749 | 3.42 | 19.78 | 648 | -- | -- |
| 107.18 | 0.485 | 9.72 | -0.814 | -- | 1.73 | -- | 1.61 | -0.58 | -- | 19.21 | 707 | -- | -- |
| 173.09 | 0.617 | 9.68 | -0.75 | 0.346 | -- | 0.827 | -- | -0.365 | 12.4 | -- | -- | -- | -- |
| 176.01 | 0.621 | 9.68 | -0.717 | 0.345 | -- | -- | -- | -0.36 | 12.6 | -- | -- | -- | -- |
| 109.17 | 0.487 | 9.77 | -1.29 | -- | 1.54 | -- | -- | -0.732 | -- | 20.7 | 1619 | -- | -- |
| 133.19 | 0.54 | 9.72 | -- | 0.39 | 1.89 | -- | -- | -0.553 | 3.84 | 20.21 | 9 | -- | -- |
| 183.45 | 0.633 | 9.69 | -0.73 | -- | -- | -- | -- | -0.366 | -- | -- | -- | -- | -- |
| 189.57 | 0.644 | 9.66 | -- | 0.356 | -- | -- | -- | -0.28 | 12.7 | -- | -- | -- | -- |
| 139.03 | 0.551 | 9.71 | -- | -- | 1.53 | -- | -- | -0.498 | -- | 20.7 | 1619 | -- | -- |
| 197.49 | 0.656 | 9.67 | -- | -- | -- | -- | -- | -0.285 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 89.56 | temperature | 20 | 720 | > th | dose dependent | rect. | 20 | 21 |
| 7 | 91.15 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 22 |
| 20 | 92.39 | temperature | 10 | 270 | > th | dose dependent | rect. | 2 | 23 |
| 24 | 92.52 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 30 | 92.90 | temperature | 20 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 32 | 92.97 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 37 | 93.25 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 21 |
| 57 | 94.32 | temperature | 10 | 720 | > th | dose dependent | rect. | 4 | 21 |
| 72 | 94.73 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 82 | 94.92 | temperature | 20 | 720 | > th | dose dependent | no | NA | NA |
| 96 | 95.15 | temperature | 20 | 4320 | > th | dose dependent | rect. | 23 | 2 |
| 111 | 95.37 | temperature | 20 | 4320 | > th | dose dependent | rect. | 23 | 5 |
| 122 | 95.59 | temperature | 20 | 720 | > th | dose dependent | rect. | 15 | 23 |
| 135 | 95.70 | temperature | 20 | 10 | > th | dose dependent | no | NA | NA |
| 136 | 95.71 | temperature | 20 | 4320 | > th | dose dependent | rect. | 21 | 7 |
| 148 | 95.84 | temperature | 20 | 4320 | > th | dose dependent | rect. | 21 | 5 |
| 165 | 95.98 | temperature | 20 | 4320 | > th | dose dependent | rect. | 3 | 1 |
| 231 | 96.32 | temperature | 20 | 1440 | > th | dose dependent | sin | 14 | NA |
| 234 | 96.33 | temperature | 20 | 1440 | > th | dose dependent | rect. | 23 | 15 |
| 261 | 96.44 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 2 |
| 298 | 96.58 | temperature | 20 | 1440 | > th | dose dependent | sin | 7 | NA |
| 315 | 96.63 | temperature | 20 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 455 | 97.34 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 501 | 97.61 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 21 |
| 548 | 97.90 | temperature | 25 | 1440 | > th | dose independent | rect. | 17 | 22 |
| 595 | 98.12 | temperature | 30 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 599 | 98.12 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 620 | 98.25 | temperature | 10 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 629 | 98.29 | temperature | 20 | 1440 | > th | dose dependent | rect. | 3 | 5 |
| 664 | 98.47 | temperature | 25 | 1440 | > th | dose independent | rect. | 24 | 22 |
| 715 | 98.67 | temperature | 30 | 720 | < th | dose dependent | rect. | 16 | 21 |
| 718 | 98.69 | temperature | 25 | 1440 | > th | dose independent | rect. | 11 | 23 |
| 745 | 98.82 | temperature | 25 | 1440 | < th | dose independent | rect. | 17 | 21 |
| 765 | 98.90 | temperature | 25 | 1440 | > th | dose independent | rect. | 5 | 23 |
| 777 | 98.93 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 778 | 98.93 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 787 | 98.99 | temperature | 25 | 4320 | < th | dose independent | rect. | 16 | 16 |
| 794 | 99.02 | temperature | 25 | 1440 | > th | dose independent | no | NA | NA |
| 816 | 99.11 | temperature | 25 | 4320 | > th | dose independent | rect. | 16 | 16 |
| 824 | 99.15 | temperature | 25 | 1440 | > th | dose independent | rect. | 3 | 23 |
| 868 | 99.27 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 878 | 99.31 | temperature | 25 | 1440 | > th | dose independent | rect. | 19 | 2 |
| 892 | 99.33 | temperature | 30 | 4320 | < th | dose dependent | rect. | 17 | 9 |
| 905 | 99.35 | temperature | 30 | 4320 | < th | dose dependent | rect. | 18 | 7 |
| 933 | 99.41 | temperature | 10 | 4320 | > th | dose dependent | rect. | 18 | 7 |
| 954 | 99.44 | temperature | 10 | 4320 | > th | dose dependent | rect. | 17 | 9 |
| 973 | 99.47 | temperature | 25 | 1440 | < th | dose independent | rect. | 1 | 22 |
| 996 | 99.51 | temperature | 25 | 1440 | < th | dose independent | rect. | 13 | 21 |
| 997 | 99.51 | temperature | 25 | 1440 | < th | dose independent | rect. | 3 | 23 |