Os08g0460000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Germin-like protein 1 precursor.
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Os08g0460000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Germin-like protein 1 precursor.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 449.34 | 0.996 | 8.59 | 11 | 0.178 | 379 | 0.508 | 786 | -0.0219 | 3.04 | 15 | 4323 | -- | -- |
| 500.32 | 1.05 | 3.28 | -1.18 | 0.15 | 4.41 | 0.708 | -- | -0.244 | 3.68 | 15 | 4323 | -- | -- |
| 449.96 | 0.988 | 8.59 | 11 | 0.184 | 379 | -- | 787 | -0.0399 | 2.04 | 14.99 | 4321 | -- | -- |
| 483.88 | 1.02 | 3.21 | -0.648 | 0.227 | 2.61 | -- | -- | 0.0146 | 3.34 | 18.81 | 2789 | -- | -- |
| 451.87 | 0.99 | 8.59 | 11 | -- | 380 | -- | 788 | -0.0254 | -- | 14.99 | 4325 | -- | -- |
| 536.59 | 1.09 | 3.3 | -1.37 | 0.227 | -- | -0.193 | -- | -0.293 | 0.812 | -- | -- | -- | -- |
| 536.7 | 1.08 | 3.29 | -1.36 | 0.231 | -- | -- | -- | -0.292 | 1.35 | -- | -- | -- | -- |
| 488.12 | 1.03 | 3.23 | -0.55 | -- | 2.58 | -- | -- | -0.0105 | -- | 18.81 | 2800 | -- | -- |
| 488.48 | 1.03 | 3.21 | -- | 0.308 | 3.02 | -- | -- | 0.0916 | 2.14 | 19 | 2790 | -- | -- |
| 539.99 | 1.09 | 3.29 | -1.35 | -- | -- | -- | -- | -0.288 | -- | -- | -- | -- | -- |
| 585.5 | 1.13 | 3.26 | -- | 0.208 | -- | -- | -- | -0.141 | 1.11 | -- | -- | -- | -- |
| 493.96 | 1.04 | 3.21 | -- | -- | 2.97 | -- | -- | 0.0929 | -- | 19 | 2839 | -- | -- |
| 588.19 | 1.13 | 3.26 | -- | -- | -- | -- | -- | -0.138 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 434.23 | wind | 9 | 10 | > th | dose independent | rect. | 18 | 1 |
| 4 | 434.23 | wind | 9 | 10 | > th | dose dependent | rect. | 18 | 1 |
| 7 | 434.50 | wind | 9 | 10 | > th | dose independent | rect. | 17 | 5 |
| 33 | 434.82 | wind | 9 | 90 | > th | dose independent | rect. | 18 | 16 |
| 52 | 435.14 | wind | 9 | 10 | > th | dose independent | rect. | 17 | 3 |
| 118 | 438.99 | wind | 7 | 10 | > th | dose dependent | rect. | 18 | 11 |
| 125 | 439.65 | wind | 7 | 10 | > th | dose dependent | rect. | 18 | 4 |
| 135 | 445.06 | temperature | 15 | 4320 | < th | dose dependent | rect. | 18 | 13 |
| 176 | 446.29 | temperature | 15 | 4320 | < th | dose dependent | rect. | 2 | 21 |
| 279 | 448.27 | temperature | 15 | 4320 | < th | dose dependent | sin | 12 | NA |
| 301 | 448.94 | temperature | 15 | 4320 | < th | dose dependent | rect. | 18 | 22 |
| 307 | 449.17 | wind | 9 | 10 | > th | dose independent | sin | 12 | NA |
| 317 | 449.56 | temperature | 15 | 4320 | < th | dose dependent | no | NA | NA |
| 334 | 450.06 | temperature | 15 | 4320 | < th | dose dependent | rect. | 21 | 23 |
| 378 | 452.27 | wind | 9 | 10 | < th | dose independent | sin | 12 | NA |
| 496 | 456.56 | radiation | 40 | 270 | > th | dose dependent | rect. | 14 | 2 |
| 522 | 457.21 | temperature | 20 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 528 | 458.03 | humidity | 50 | 14400 | > th | dose independent | rect. | 19 | 6 |
| 531 | 458.37 | temperature | 15 | 4320 | > th | dose independent | rect. | 18 | 3 |
| 533 | 458.65 | temperature | 15 | 4320 | < th | dose independent | rect. | 18 | 3 |
| 534 | 458.71 | temperature | 15 | 4320 | < th | dose independent | rect. | 18 | 1 |
| 615 | 462.43 | radiation | 40 | 270 | > th | dose independent | rect. | 15 | 1 |
| 658 | 463.00 | humidity | 50 | 14400 | > th | dose independent | rect. | 19 | 12 |
| 667 | 463.22 | temperature | 15 | 4320 | < th | dose dependent | sin | 0 | NA |
| 837 | 468.91 | humidity | 60 | 14400 | < th | dose dependent | rect. | 19 | 13 |
| 875 | 469.83 | humidity | 70 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 880 | 469.89 | humidity | 60 | 14400 | < th | dose dependent | rect. | 19 | 3 |
| 970 | 471.25 | humidity | 70 | 14400 | > th | dose independent | rect. | 20 | 1 |