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Os08g0459100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
Description : Leucine-rich repeat, cysteine-containing containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
111.57 | 0.496 | 7.09 | 0.282 | 1.33 | 1 | 0.204 | 0.289 | -0.276 | 18.5 | 25.8 | 96 | -- | -- |
111.59 | 0.492 | 7.09 | 0.255 | 1.32 | 1.03 | 0.207 | -- | -0.279 | 18.5 | 25.85 | 99 | -- | -- |
111.66 | 0.492 | 7.08 | 0.288 | 1.32 | 1.01 | -- | 0.377 | -0.27 | 18.6 | 25.8 | 98 | -- | -- |
111.71 | 0.492 | 7.09 | 0.247 | 1.32 | 1.05 | -- | -- | -0.281 | 18.6 | 25.84 | 99 | -- | -- |
165.37 | 0.599 | 7.09 | -0.129 | -- | 1.97 | -- | -1.25 | -0.411 | -- | 25.3 | 327 | -- | -- |
127.85 | 0.53 | 7.08 | 0.412 | 1.63 | -- | 0.755 | -- | -0.238 | 17.9 | -- | -- | -- | -- |
129.24 | 0.532 | 7.08 | 0.406 | 1.63 | -- | -- | -- | -0.235 | 17.9 | -- | -- | -- | -- |
165.78 | 0.6 | 7.08 | 0.0673 | -- | 1.9 | -- | -- | -0.397 | -- | 25.07 | 324 | -- | -- |
113.25 | 0.496 | 7.1 | -- | 1.3 | 1.1 | -- | -- | -0.312 | 18.6 | 25.8 | 101 | -- | -- |
267.6 | 0.764 | 7.05 | 0.357 | -- | -- | -- | -- | -0.273 | -- | -- | -- | -- | -- |
133.58 | 0.541 | 7.09 | -- | 1.63 | -- | -- | -- | -0.28 | 17.9 | -- | -- | -- | -- |
165.89 | 0.6 | 7.08 | -- | -- | 1.9 | -- | -- | -0.406 | -- | 25.05 | 324 | -- | -- |
270.97 | 0.768 | 7.06 | -- | -- | -- | -- | -- | -0.312 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance![]() |
Histogram![]() ![]() |
Local optima within top1000 grid-points
rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
---|---|---|---|---|---|---|---|---|---|
1 | 109.51 | temperature | 30 | 720 | < th | dose independent | rect. | 6 | 6 |
2 | 110.59 | temperature | 30 | 720 | < th | dose independent | rect. | 24 | 12 |
5 | 111.05 | temperature | 25 | 270 | > th | dose dependent | sin | 2 | NA |
7 | 111.50 | temperature | 30 | 720 | < th | dose independent | rect. | 20 | 16 |
10 | 111.58 | temperature | 25 | 30 | > th | dose dependent | rect. | 1 | 21 |
11 | 111.61 | temperature | 25 | 30 | > th | dose dependent | rect. | 1 | 19 |
15 | 111.69 | temperature | 25 | 90 | > th | dose dependent | rect. | 3 | 19 |
21 | 111.76 | temperature | 25 | 90 | > th | dose dependent | sin | 23 | NA |
25 | 111.80 | temperature | 30 | 270 | < th | dose independent | rect. | 7 | 12 |
52 | 111.98 | temperature | 25 | 90 | > th | dose dependent | rect. | 8 | 14 |
64 | 112.03 | temperature | 30 | 270 | < th | dose independent | sin | 2 | NA |
70 | 112.05 | temperature | 25 | 30 | > th | dose dependent | rect. | 21 | 23 |
81 | 112.12 | temperature | 25 | 90 | > th | dose dependent | rect. | 8 | 12 |
92 | 112.21 | temperature | 25 | 30 | > th | dose dependent | rect. | 8 | 23 |
98 | 112.24 | temperature | 25 | 270 | > th | dose dependent | rect. | 17 | 22 |
103 | 112.27 | temperature | 25 | 720 | > th | dose dependent | rect. | 5 | 6 |
123 | 112.35 | temperature | 25 | 90 | > th | dose dependent | rect. | 3 | 23 |
137 | 112.40 | temperature | 25 | 90 | > th | dose dependent | no | NA | NA |
145 | 112.43 | temperature | 30 | 270 | > th | dose independent | rect. | 17 | 21 |
155 | 112.46 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 4 |
156 | 112.47 | temperature | 25 | 270 | > th | dose dependent | rect. | 3 | 13 |
158 | 112.48 | temperature | 25 | 270 | > th | dose dependent | rect. | 1 | 15 |
191 | 112.57 | temperature | 30 | 720 | < th | dose independent | rect. | 9 | 3 |
212 | 112.64 | temperature | 25 | 90 | > th | dose dependent | rect. | 8 | 18 |
225 | 112.68 | temperature | 30 | 720 | < th | dose independent | rect. | 11 | 1 |
290 | 112.91 | temperature | 25 | 720 | > th | dose dependent | rect. | 8 | 1 |
305 | 112.97 | temperature | 25 | 30 | > th | dose dependent | rect. | 19 | 23 |
306 | 112.98 | temperature | 30 | 270 | > th | dose independent | sin | 3 | NA |
382 | 113.28 | temperature | 30 | 270 | < th | dose independent | rect. | 22 | 23 |
422 | 113.46 | temperature | 30 | 270 | < th | dose independent | rect. | 13 | 23 |
432 | 113.52 | temperature | 30 | 720 | < th | dose dependent | rect. | 9 | 2 |
438 | 113.54 | temperature | 25 | 90 | > th | dose dependent | rect. | 12 | 23 |
561 | 114.07 | temperature | 25 | 10 | > th | dose dependent | rect. | 12 | 23 |
603 | 114.22 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 12 |
608 | 114.24 | temperature | 25 | 720 | < th | dose independent | rect. | 6 | 3 |
610 | 114.24 | radiation | 40 | 720 | < th | dose dependent | rect. | 24 | 10 |
627 | 114.31 | temperature | 30 | 270 | > th | dose independent | rect. | 8 | 8 |
653 | 114.37 | humidity | 70 | 90 | > th | dose independent | rect. | 6 | 23 |
795 | 114.67 | temperature | 10 | 720 | > th | dose dependent | rect. | 8 | 7 |
863 | 114.89 | temperature | 30 | 270 | < th | dose independent | rect. | 4 | 23 |
915 | 114.98 | radiation | 20 | 720 | < th | dose independent | rect. | 24 | 9 |
922 | 114.99 | temperature | 25 | 720 | > th | dose independent | rect. | 6 | 3 |
939 | 115.03 | temperature | 30 | 270 | < th | dose independent | no | NA | NA |
940 | 115.03 | temperature | 30 | 720 | > th | dose independent | rect. | 8 | 3 |
971 | 115.06 | temperature | 30 | 270 | < th | dose independent | rect. | 11 | 23 |
978 | 115.08 | temperature | 30 | 270 | < th | dose independent | sin | 9 | NA |