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Os08g0459100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Leucine-rich repeat, cysteine-containing containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.09 (0.0287) R2 : 0.521
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.63 (0.0752) R2dC : 0.495 R2C : 0.492
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.28 (0.0603) R2dN8 : 0.0293 R2N8 : 0.0258
σ : 0.541
deviance : 133.58
__
_____
C
peak time of C : 17.9
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
111.57 0.496 7.09 0.282 1.33 1 0.204 0.289 -0.276 18.5 25.8 96 -- --
111.59 0.492 7.09 0.255 1.32 1.03 0.207 -- -0.279 18.5 25.85 99 -- --
111.66 0.492 7.08 0.288 1.32 1.01 -- 0.377 -0.27 18.6 25.8 98 -- --
111.71 0.492 7.09 0.247 1.32 1.05 -- -- -0.281 18.6 25.84 99 -- --
165.37 0.599 7.09 -0.129 -- 1.97 -- -1.25 -0.411 -- 25.3 327 -- --
127.85 0.53 7.08 0.412 1.63 -- 0.755 -- -0.238 17.9 -- -- -- --
129.24 0.532 7.08 0.406 1.63 -- -- -- -0.235 17.9 -- -- -- --
165.78 0.6 7.08 0.0673 -- 1.9 -- -- -0.397 -- 25.07 324 -- --
113.25 0.496 7.1 -- 1.3 1.1 -- -- -0.312 18.6 25.8 101 -- --
267.6 0.764 7.05 0.357 -- -- -- -- -0.273 -- -- -- -- --
133.58 0.541 7.09 -- 1.63 -- -- -- -0.28 17.9 -- -- -- --
165.89 0.6 7.08 -- -- 1.9 -- -- -0.406 -- 25.05 324 -- --
270.97 0.768 7.06 -- -- -- -- -- -0.312 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 109.51 temperature 30 720 < th dose independent rect. 6 6
2 110.59 temperature 30 720 < th dose independent rect. 24 12
5 111.05 temperature 25 270 > th dose dependent sin 2 NA
7 111.50 temperature 30 720 < th dose independent rect. 20 16
10 111.58 temperature 25 30 > th dose dependent rect. 1 21
11 111.61 temperature 25 30 > th dose dependent rect. 1 19
15 111.69 temperature 25 90 > th dose dependent rect. 3 19
21 111.76 temperature 25 90 > th dose dependent sin 23 NA
25 111.80 temperature 30 270 < th dose independent rect. 7 12
52 111.98 temperature 25 90 > th dose dependent rect. 8 14
64 112.03 temperature 30 270 < th dose independent sin 2 NA
70 112.05 temperature 25 30 > th dose dependent rect. 21 23
81 112.12 temperature 25 90 > th dose dependent rect. 8 12
92 112.21 temperature 25 30 > th dose dependent rect. 8 23
98 112.24 temperature 25 270 > th dose dependent rect. 17 22
103 112.27 temperature 25 720 > th dose dependent rect. 5 6
123 112.35 temperature 25 90 > th dose dependent rect. 3 23
137 112.40 temperature 25 90 > th dose dependent no NA NA
145 112.43 temperature 30 270 > th dose independent rect. 17 21
155 112.46 temperature 30 720 < th dose dependent rect. 7 4
156 112.47 temperature 25 270 > th dose dependent rect. 3 13
158 112.48 temperature 25 270 > th dose dependent rect. 1 15
191 112.57 temperature 30 720 < th dose independent rect. 9 3
212 112.64 temperature 25 90 > th dose dependent rect. 8 18
225 112.68 temperature 30 720 < th dose independent rect. 11 1
290 112.91 temperature 25 720 > th dose dependent rect. 8 1
305 112.97 temperature 25 30 > th dose dependent rect. 19 23
306 112.98 temperature 30 270 > th dose independent sin 3 NA
382 113.28 temperature 30 270 < th dose independent rect. 22 23
422 113.46 temperature 30 270 < th dose independent rect. 13 23
432 113.52 temperature 30 720 < th dose dependent rect. 9 2
438 113.54 temperature 25 90 > th dose dependent rect. 12 23
561 114.07 temperature 25 10 > th dose dependent rect. 12 23
603 114.22 temperature 30 270 < th dose dependent rect. 7 12
608 114.24 temperature 25 720 < th dose independent rect. 6 3
610 114.24 radiation 40 720 < th dose dependent rect. 24 10
627 114.31 temperature 30 270 > th dose independent rect. 8 8
653 114.37 humidity 70 90 > th dose independent rect. 6 23
795 114.67 temperature 10 720 > th dose dependent rect. 8 7
863 114.89 temperature 30 270 < th dose independent rect. 4 23
915 114.98 radiation 20 720 < th dose independent rect. 24 9
922 114.99 temperature 25 720 > th dose independent rect. 6 3
939 115.03 temperature 30 270 < th dose independent no NA NA
940 115.03 temperature 30 720 > th dose independent rect. 8 3
971 115.06 temperature 30 270 < th dose independent rect. 11 23
978 115.08 temperature 30 270 < th dose independent sin 9 NA