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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0458600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : CheY-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.82 (0.0293) R2 : 0.013
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.151 (0.0617) R2dN8 : 0.0168 R2N8 : 0.013
σ : 0.552
deviance : 139.81
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
136.15 0.548 2.85 -0.0149 0.0838 3.5 -0.25 -8.93 0.174 4.85 49.69 78 -- --
138.83 0.553 2.81 0.106 0.0547 0.187 -0.289 -- 0.17 4.18 61.75 26 -- --
136.2 0.544 2.85 -0.0493 0.0738 5.04 -- -12.7 0.174 5.49 49.1 78 -- --
138.52 0.548 2.81 0.0857 0.0666 0.371 -- -- 0.173 4.81 54 104 -- --
136.47 0.544 2.86 -0.0414 -- 5.13 -- -13 0.174 -- 49.05 78 -- --
139.11 0.553 2.82 0.111 0.035 -- -0.326 -- 0.162 4.37 -- -- -- --
139.39 0.553 2.81 0.114 0.0347 -- -- -- 0.163 5.32 -- -- -- --
138.76 0.549 2.81 0.0927 -- 0.334 -- -- 0.173 -- 53.58 104 -- --
138.72 0.549 2.81 -- 0.0738 0.406 -- -- 0.164 4.72 53.93 104 -- --
139.46 0.552 2.81 0.116 -- -- -- -- 0.164 -- -- -- -- --
139.74 0.553 2.82 -- 0.0366 -- -- -- 0.151 5.2 -- -- -- --
138.98 0.549 2.81 -- -- 0.375 -- -- 0.163 -- 53 101 -- --
139.81 0.552 2.82 -- -- -- -- -- 0.151 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 121.95 temperature 20.0 30 > th dose dependent rect. 22 1
2 121.99 atmosphere 1005.0 30 > th dose dependent rect. 22 1
3 122.02 wind 9.0 1440 < th dose independent rect. 23 1
4 122.02 temperature 10.0 1440 > th dose independent rect. 23 1
7 122.02 temperature 30.0 1440 < th dose independent rect. 23 1
11 122.02 humidity 50.0 1440 > th dose independent rect. 23 1
21 122.02 atmosphere 995.0 1440 > th dose independent rect. 23 1
22 122.02 radiation 1.0 1440 < th dose independent rect. 23 1
42 122.02 temperature 10.0 1440 > th dose independent rect. 24 23
45 122.02 radiation 1.0 1440 < th dose dependent rect. 23 1
50 122.04 wind 3.0 30 < th dose independent rect. 22 1
53 122.20 temperature 20.0 30 > th dose independent rect. 22 1
54 122.20 atmosphere 995.0 30 > th dose dependent rect. 22 1
57 122.24 atmosphere 1005.0 30 > th dose independent rect. 22 1
58 122.26 humidity 80.0 30 > th dose independent rect. 22 1
59 122.26 wind 7.0 30 < th dose dependent rect. 22 1
63 122.32 precipitation 0.1 30 < th dose independent rect. 22 1
64 122.32 precipitation 0.1 30 < th dose dependent rect. 22 1
66 122.38 wind 1.0 30 > th dose independent rect. 22 1
68 122.40 humidity 50.0 30 > th dose dependent rect. 22 1
73 122.41 temperature 10.0 30 > th dose independent rect. 22 1
75 122.41 temperature 30.0 30 < th dose independent rect. 22 1
76 122.41 humidity 50.0 30 > th dose independent rect. 22 1
80 122.41 atmosphere 1010.0 30 < th dose independent rect. 22 1
82 122.41 radiation 1.0 30 < th dose independent rect. 22 1
87 122.41 temperature 10.0 30 > th dose independent rect. 23 23
88 122.41 radiation 1.0 30 < th dose dependent rect. 22 1
94 122.51 humidity 90.0 30 < th dose independent rect. 22 1
101 123.25 atmosphere 1015.0 30 < th dose dependent rect. 22 1
105 123.41 wind 1.0 30 > th dose dependent rect. 22 1
106 123.44 humidity 90.0 30 < th dose dependent rect. 22 1
109 123.93 temperature 30.0 30 < th dose dependent rect. 22 1
118 124.54 wind 9.0 30 < th dose independent rect. 23 23
153 125.67 radiation 10.0 30 > th dose independent rect. 17 14
156 126.32 radiation 10.0 30 > th dose dependent rect. 17 14
167 128.68 radiation 10.0 10 > th dose independent rect. 6 1
193 128.68 radiation 10.0 10 > th dose dependent rect. 6 1
229 131.84 humidity 50.0 30 < th dose dependent rect. 17 19
231 131.85 humidity 50.0 30 < th dose dependent rect. 17 1
249 131.89 humidity 50.0 30 < th dose independent rect. 17 19
253 131.92 humidity 50.0 30 < th dose independent rect. 17 1
271 131.95 radiation 10.0 30 > th dose independent rect. 17 1
287 132.32 radiation 10.0 30 > th dose dependent rect. 17 1
300 132.73 wind 3.0 10 < th dose dependent rect. 6 1
301 132.79 atmosphere 1005.0 10 > th dose dependent rect. 6 1
304 132.93 wind 1.0 10 < th dose independent rect. 6 1
305 133.11 radiation 10.0 10 < th dose dependent rect. 6 1
308 133.52 humidity 80.0 30 > th dose dependent rect. 6 1
325 133.75 humidity 50.0 30 > th dose independent rect. 23 23
328 133.87 temperature 30.0 30 < th dose dependent rect. 6 1
330 133.96 atmosphere 1010.0 10 < th dose independent rect. 23 23
332 134.14 humidity 50.0 30 < th dose independent sin 8 NA
336 134.32 atmosphere 1010.0 10 < th dose independent rect. 23 10
339 134.39 precipitation 0.1 270 > th dose independent rect. 8 1
340 134.39 precipitation 0.1 270 > th dose dependent rect. 8 1
341 134.39 radiation 10.0 30 < th dose dependent rect. 23 23
342 134.41 precipitation 0.1 30 < th dose independent rect. 23 23
344 134.41 precipitation 0.1 30 < th dose dependent rect. 23 23
345 134.43 humidity 90.0 720 > th dose independent rect. 10 1
347 134.43 temperature 25.0 10 > th dose dependent rect. 5 1
348 134.43 humidity 90.0 720 > th dose dependent rect. 10 1
351 134.45 atmosphere 995.0 30 > th dose independent rect. 23 23
362 134.48 atmosphere 1010.0 10 < th dose independent sin 6 NA
395 134.71 atmosphere 1010.0 10 < th dose independent rect. 23 12
399 134.82 humidity 50.0 30 > th dose independent rect. 7 23
402 134.84 temperature 25.0 30 > th dose independent rect. 5 1
404 134.87 atmosphere 1000.0 10 < th dose independent rect. 5 1
413 134.87 atmosphere 1000.0 10 < th dose dependent rect. 5 1
428 134.89 wind 1.0 90 < th dose dependent rect. 11 1
431 134.93 wind 1.0 10 < th dose dependent rect. 11 1
444 135.05 temperature 25.0 720 > th dose dependent rect. 23 9
466 135.11 temperature 25.0 720 > th dose independent rect. 23 10
486 135.22 wind 1.0 90 < th dose independent rect. 11 1
487 135.23 atmosphere 1010.0 10 < th dose independent rect. 24 17
503 135.28 temperature 10.0 720 > th dose independent rect. 3 8
504 135.28 atmosphere 995.0 720 > th dose independent rect. 3 8
512 135.28 temperature 10.0 720 > th dose independent rect. 11 16
513 135.28 radiation 1.0 30 < th dose independent rect. 23 23
535 135.34 wind 1.0 30 > th dose independent rect. 6 1
536 135.34 atmosphere 1000.0 30 > th dose independent rect. 6 1
539 135.35 wind 9.0 1440 < th dose independent rect. 7 1
540 135.35 temperature 10.0 1440 > th dose independent rect. 7 1
544 135.35 temperature 30.0 1440 < th dose independent rect. 7 1
548 135.35 humidity 50.0 1440 > th dose independent rect. 7 1
553 135.35 atmosphere 995.0 1440 > th dose independent rect. 7 1
554 135.35 atmosphere 1015.0 1440 < th dose independent rect. 7 1
557 135.35 temperature 10.0 1440 > th dose independent rect. 8 23
561 135.36 humidity 90.0 30 < th dose independent rect. 6 1
568 135.41 temperature 10.0 720 > th dose independent rect. 15 8
569 135.41 temperature 10.0 720 > th dose independent rect. 23 16
571 135.43 humidity 80.0 30 > th dose independent rect. 6 1
578 135.43 wind 9.0 720 < th dose independent rect. 3 8
589 135.44 temperature 10.0 30 > th dose independent rect. 6 1
591 135.44 temperature 30.0 30 < th dose independent rect. 6 1
592 135.44 humidity 50.0 30 > th dose independent rect. 6 1
598 135.44 atmosphere 1015.0 30 < th dose independent rect. 6 1
599 135.44 radiation 20.0 30 < th dose independent rect. 6 1
602 135.44 precipitation 0.1 30 < th dose independent rect. 6 1
603 135.44 temperature 10.0 30 > th dose independent rect. 7 23
604 135.44 precipitation 0.1 30 < th dose dependent rect. 6 1
606 135.45 humidity 50.0 30 > th dose independent sin 10 NA
608 135.45 atmosphere 1010.0 10 < th dose independent rect. 24 15
610 135.46 wind 1.0 10 < th dose independent rect. 11 1
620 135.48 humidity 50.0 30 < th dose dependent sin 8 NA
625 135.51 radiation 10.0 30 > th dose independent sin 11 NA
632 135.53 atmosphere 1015.0 720 < th dose independent rect. 3 8
648 135.56 atmosphere 1000.0 30 > th dose independent rect. 23 7
649 135.56 temperature 25.0 270 > th dose dependent rect. 2 4
650 135.57 precipitation 0.1 720 > th dose independent rect. 6 1
654 135.57 precipitation 0.1 720 > th dose dependent rect. 6 1
657 135.59 radiation 40.0 720 < th dose independent rect. 15 8
713 135.71 wind 9.0 30 < th dose independent rect. 7 23
721 135.75 precipitation 0.1 30 < th dose independent rect. 7 23
726 135.75 precipitation 0.1 30 < th dose dependent rect. 7 23
729 135.77 temperature 25.0 270 > th dose independent rect. 2 4
733 135.77 atmosphere 995.0 30 > th dose independent rect. 7 23
742 135.83 temperature 10.0 30 > th dose dependent rect. 6 1
759 135.85 wind 3.0 270 > th dose independent rect. 3 1
782 135.88 wind 9.0 720 < th dose independent rect. 23 16
823 135.91 temperature 30.0 10 > th dose dependent rect. 17 1
837 135.97 radiation 1.0 90 < th dose independent rect. 23 11
842 135.98 radiation 1.0 90 < th dose independent rect. 23 9
863 136.01 wind 9.0 720 < th dose independent rect. 15 8
880 136.01 temperature 25.0 90 < th dose dependent rect. 10 1
886 136.03 wind 1.0 90 > th dose independent rect. 5 18
892 136.04 radiation 1.0 90 < th dose dependent rect. 23 9
908 136.07 radiation 1.0 90 < th dose independent rect. 23 20
924 136.11 temperature 25.0 1440 > th dose dependent rect. 7 1
928 136.12 radiation 1.0 90 < th dose dependent rect. 23 20
933 136.15 humidity 80.0 90 > th dose independent rect. 5 18
962 136.17 humidity 80.0 90 > th dose independent rect. 23 6
974 136.18 temperature 25.0 720 < th dose independent rect. 23 10
980 136.19 temperature 25.0 1440 < th dose independent rect. 24 8
981 136.20 precipitation 0.1 1440 < th dose independent rect. 23 1
986 136.20 precipitation 0.1 90 < th dose independent rect. 5 18
988 136.20 precipitation 0.1 1440 < th dose dependent rect. 23 1
990 136.20 precipitation 0.1 90 < th dose dependent rect. 5 18
991 136.21 atmosphere 1010.0 720 < th dose independent rect. 23 1