Os08g0457400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Avr9/Cf-9 induced kinase 1.
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Os08g0457400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Avr9/Cf-9 induced kinase 1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 387.86 | 0.925 | 7.47 | -0.378 | 1.44 | 2.23 | -1.5 | -1.9 | 0.672 | 10.4 | 20.1 | 3488 | -- | -- |
| 392.28 | 0.922 | 7.39 | -0.114 | 1.41 | 2.61 | -1.41 | -- | 0.738 | 10.5 | 20 | 3399 | -- | -- |
| 396.25 | 0.927 | 7.46 | -0.381 | 1.41 | 2.25 | -- | -1.77 | 0.679 | 10.4 | 20 | 3291 | -- | -- |
| 399.18 | 0.931 | 7.39 | -0.137 | 1.4 | 2.73 | -- | -- | 0.769 | 10.5 | 19.64 | 3271 | -- | -- |
| 514.05 | 1.06 | 7.5 | -0.341 | -- | 2.24 | -- | -1.63 | 0.699 | -- | 19.9 | 3108 | -- | -- |
| 513.65 | 1.06 | 7.24 | 1.41 | 1.37 | -- | -1.5 | -- | 1.42 | 10.4 | -- | -- | -- | -- |
| 522.71 | 1.07 | 7.25 | 1.35 | 1.37 | -- | -- | -- | 1.42 | 10.4 | -- | -- | -- | -- |
| 517.1 | 1.06 | 7.43 | -0.122 | -- | 2.7 | -- | -- | 0.762 | -- | 19.7 | 3116 | -- | -- |
| 399.52 | 0.931 | 7.39 | -- | 1.4 | 2.65 | -- | -- | 0.798 | 10.5 | 19.66 | 3271 | -- | -- |
| 637.94 | 1.18 | 7.28 | 1.33 | -- | -- | -- | -- | 1.41 | -- | -- | -- | -- | -- |
| 571.01 | 1.12 | 7.28 | -- | 1.36 | -- | -- | -- | 1.26 | 10.3 | -- | -- | -- | -- |
| 517.26 | 1.06 | 7.42 | -- | -- | 2.61 | -- | -- | 0.804 | -- | 19.63 | 3115 | -- | -- |
| 684.66 | 1.22 | 7.32 | -- | -- | -- | -- | -- | 1.26 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 384.02 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 2 |
| 2 | 384.24 | temperature | 20 | 4320 | < th | dose independent | rect. | 6 | 1 |
| 6 | 387.01 | temperature | 20 | 4320 | > th | dose independent | rect. | 6 | 1 |
| 10 | 388.10 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 3 |
| 11 | 388.24 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 3 |
| 13 | 388.63 | temperature | 20 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 17 | 389.60 | temperature | 20 | 4320 | < th | dose independent | rect. | 19 | 5 |
| 20 | 389.82 | temperature | 20 | 4320 | > th | dose dependent | rect. | 10 | 1 |
| 27 | 390.57 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 31 | 390.96 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 6 |
| 33 | 391.18 | temperature | 20 | 4320 | > th | dose independent | rect. | 17 | 18 |
| 37 | 391.37 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 12 |
| 46 | 391.55 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 17 |
| 49 | 391.64 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 6 |
| 58 | 391.71 | temperature | 20 | 1440 | > th | dose independent | rect. | 2 | 8 |
| 67 | 391.95 | temperature | 20 | 4320 | < th | dose independent | rect. | 5 | 5 |
| 71 | 392.03 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 16 | 5 |
| 72 | 392.05 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 15 | 7 |
| 81 | 392.14 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 14 | 9 |
| 86 | 392.18 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 18 | 3 |
| 91 | 392.25 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 6 |
| 110 | 392.39 | temperature | 20 | 1440 | < th | dose dependent | rect. | 3 | 2 |
| 112 | 392.42 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 12 |
| 124 | 392.55 | humidity | 60 | 43200 | < th | dose independent | rect. | 20 | 13 |
| 136 | 392.65 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 147 | 392.73 | humidity | 60 | 43200 | > th | dose independent | rect. | 20 | 13 |
| 152 | 392.79 | humidity | 70 | 43200 | < th | dose dependent | rect. | 21 | 12 |
| 165 | 392.93 | temperature | 25 | 1440 | < th | dose dependent | rect. | 5 | 3 |
| 232 | 393.44 | humidity | 60 | 43200 | < th | dose independent | rect. | 7 | 2 |
| 288 | 393.82 | temperature | 20 | 4320 | > th | dose independent | sin | 14 | NA |
| 326 | 393.99 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 12 | 16 |
| 338 | 394.06 | atmosphere | 1015 | 43200 | < th | dose independent | sin | 17 | NA |
| 362 | 394.20 | atmosphere | 1015 | 43200 | > th | dose independent | sin | 17 | NA |
| 369 | 394.23 | temperature | 20 | 4320 | > th | dose independent | rect. | 2 | 22 |
| 383 | 394.30 | temperature | 20 | 4320 | > th | dose independent | rect. | 5 | 23 |
| 433 | 394.53 | temperature | 20 | 1440 | < th | dose independent | sin | 7 | NA |
| 444 | 394.59 | temperature | 15 | 1440 | > th | dose dependent | rect. | 3 | 1 |
| 464 | 394.63 | temperature | 15 | 1440 | > th | dose dependent | rect. | 5 | 1 |
| 478 | 394.71 | temperature | 20 | 4320 | > th | dose independent | no | NA | NA |
| 522 | 394.83 | temperature | 20 | 4320 | < th | dose independent | rect. | 2 | 22 |
| 524 | 394.84 | temperature | 20 | 4320 | < th | dose independent | sin | 13 | NA |
| 534 | 394.86 | wind | 3 | 43200 | < th | dose dependent | rect. | 21 | 3 |
| 548 | 394.92 | temperature | 20 | 1440 | > th | dose independent | sin | 7 | NA |
| 573 | 395.02 | temperature | 20 | 4320 | > th | dose independent | rect. | 8 | 23 |
| 581 | 395.04 | temperature | 20 | 4320 | < th | dose independent | rect. | 5 | 23 |
| 604 | 395.12 | humidity | 60 | 43200 | > th | dose independent | rect. | 7 | 2 |
| 627 | 395.21 | humidity | 70 | 43200 | < th | dose dependent | rect. | 7 | 2 |
| 642 | 395.26 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 19 | 9 |
| 661 | 395.29 | atmosphere | 1015 | 43200 | > th | dose dependent | sin | 14 | NA |
| 669 | 395.31 | temperature | 10 | 1440 | > th | dose dependent | rect. | 2 | 5 |
| 695 | 395.40 | temperature | 20 | 4320 | < th | dose independent | no | NA | NA |
| 700 | 395.42 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 3 | 21 |
| 721 | 395.46 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 7 | 17 |
| 763 | 395.53 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 11 | 18 |
| 801 | 395.62 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 6 | 18 |
| 850 | 395.71 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 23 |
| 862 | 395.73 | temperature | 20 | 4320 | < th | dose independent | rect. | 8 | 23 |