Os08g0457000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os08g0457000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 285.42 | 0.794 | 4.29 | -1.32 | 1.67 | -2.63 | -1.17 | 0.257 | -0.33 | 0.26 | 24.08 | 3024 | -- | -- |
| 285.46 | 0.787 | 4.28 | -1.27 | 1.68 | -2.69 | -1.12 | -- | -0.32 | 0.247 | 23.93 | 2997 | -- | -- |
| 291.08 | 0.795 | 4.29 | -1.27 | 1.66 | -2.61 | -- | 0.371 | -0.326 | 0.135 | 24.02 | 2932 | -- | -- |
| 291.15 | 0.795 | 4.28 | -1.22 | 1.67 | -2.69 | -- | -- | -0.307 | 0.138 | 23.83 | 2950 | -- | -- |
| 421.86 | 0.957 | 4.31 | -1.57 | -- | -2.93 | -- | 1.67 | -0.455 | -- | 28.19 | 2384 | -- | -- |
| 398.69 | 0.936 | 4.13 | -0.0803 | 1.72 | -- | -1.23 | -- | 0.353 | 0.414 | -- | -- | -- | -- |
| 405.05 | 0.942 | 4.13 | -0.0318 | 1.73 | -- | -- | -- | 0.36 | 0.309 | -- | -- | -- | -- |
| 425.87 | 0.961 | 4.26 | -1.16 | -- | -2.89 | -- | -- | -0.374 | -- | 27.6 | 2400 | -- | -- |
| 314.85 | 0.826 | 4.22 | -- | 1.71 | -2.39 | -- | -- | -0.0448 | 0.278 | 24.44 | 1659 | -- | -- |
| 592.2 | 1.14 | 4.09 | 0.0256 | -- | -- | -- | -- | 0.387 | -- | -- | -- | -- | -- |
| 405.08 | 0.941 | 4.13 | -- | 1.72 | -- | -- | -- | 0.363 | 0.308 | -- | -- | -- | -- |
| 429.13 | 0.965 | 4.21 | -- | -- | -2.98 | -- | -- | -0.15 | -- | 29.3 | 943 | -- | -- |
| 592.22 | 1.14 | 4.09 | -- | -- | -- | -- | -- | 0.384 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 276.80 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 2 | 278.03 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 3 | 278.95 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 4 |
| 16 | 281.12 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 19 | 281.37 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 7 |
| 26 | 281.74 | temperature | 25 | 1440 | < th | dose dependent | rect. | 19 | 9 |
| 52 | 282.47 | temperature | 25 | 270 | < th | dose dependent | rect. | 12 | 21 |
| 85 | 283.30 | temperature | 15 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 106 | 283.64 | temperature | 10 | 270 | > th | dose dependent | sin | 11 | NA |
| 128 | 283.98 | temperature | 20 | 4320 | < th | dose independent | sin | 15 | NA |
| 132 | 284.01 | temperature | 25 | 1440 | < th | dose dependent | sin | 12 | NA |
| 152 | 284.27 | temperature | 20 | 4320 | > th | dose independent | sin | 15 | NA |
| 157 | 284.29 | temperature | 10 | 1440 | > th | dose dependent | rect. | 20 | 8 |
| 574 | 287.01 | temperature | 30 | 270 | < th | dose dependent | sin | 11 | NA |
| 741 | 287.78 | temperature | 10 | 1440 | > th | dose dependent | sin | 11 | NA |
| 851 | 288.30 | temperature | 25 | 720 | < th | dose dependent | sin | 17 | NA |
| 976 | 288.85 | temperature | 15 | 4320 | > th | dose dependent | sin | 14 | NA |