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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0456600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.02 (0.0321) R2 : 0.000314
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0256 (0.0675) R2dN8 : 0.000406 R2N8 : 0.000314
σ : 0.604
deviance : 167.31
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
138.46 0.553 3.05 -0.608 0.308 -0.759 -0.0281 3.35 -0.0395 4.44 0.4166 4320 -- --
147.21 0.565 3.02 -0.767 0.295 -0.601 -0.13 -- -0.0548 4.37 0.4945 4310 -- --
138.46 0.548 3.05 -0.607 0.308 -0.759 -- 3.35 -0.0393 4.45 0.4249 4318 -- --
147.25 0.565 3.02 -0.762 0.294 -0.595 -- -- -0.0541 4.48 0.4457 4310 -- --
143.52 0.558 3.06 -0.6 -- -0.758 -- 3.26 -0.0312 -- 0.4417 4319 -- --
151.4 0.577 3.03 -0.664 0.296 -- -0.0342 -- -0.106 4.54 -- -- -- --
151.4 0.576 3.03 -0.664 0.296 -- -- -- -0.106 4.56 -- -- -- --
151.87 0.574 3.02 -0.751 -- -0.598 -- -- -0.0462 -- 0.444 4310 -- --
161.66 0.592 3.01 -- 0.282 -0.331 -- -- 0.00295 4.58 0.478 4310 -- --
156.07 0.584 3.03 -0.653 -- -- -- -- -0.098 -- -- -- -- --
163.03 0.597 3.02 -- 0.284 -- -- -- -0.0318 4.62 -- -- -- --
165.88 0.6 3.01 -- -- -0.338 -- -- 0.00993 -- 0.3596 4310 -- --
167.31 0.604 3.02 -- -- -- -- -- -0.0256 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 126.73 temperature 25.0 30 > th dose dependent rect. 6 1
3 127.63 atmosphere 1010.0 30 < th dose independent rect. 6 1
4 128.18 radiation 10.0 30 < th dose independent rect. 6 1
5 129.68 wind 3.0 30 > th dose dependent rect. 6 1
9 131.01 atmosphere 1010.0 30 < th dose dependent rect. 6 1
10 132.11 humidity 90.0 4320 > th dose dependent rect. 9 1
12 133.19 temperature 20.0 1440 < th dose dependent rect. 4 1
16 133.79 wind 3.0 30 > th dose independent rect. 6 1
18 133.87 humidity 90.0 4320 > th dose dependent rect. 8 5
23 134.06 humidity 90.0 30 < th dose dependent rect. 6 1
27 134.50 atmosphere 995.0 14400 > th dose independent rect. 7 1
32 134.73 radiation 1.0 10 > th dose dependent rect. 6 1
41 135.33 precipitation 0.1 4320 < th dose independent rect. 23 12
42 135.33 precipitation 0.1 4320 < th dose dependent rect. 23 12
47 135.42 precipitation 0.1 4320 > th dose independent rect. 23 12
48 135.44 precipitation 0.1 4320 > th dose dependent rect. 23 12
50 135.47 humidity 90.0 4320 > th dose dependent rect. 5 15
52 135.53 humidity 90.0 4320 > th dose dependent sin 0 NA
83 135.83 humidity 90.0 4320 < th dose independent rect. 9 1
85 135.84 humidity 90.0 4320 > th dose independent rect. 9 1
91 135.88 temperature 25.0 30 > th dose independent rect. 6 1
105 135.97 precipitation 0.1 4320 > th dose independent rect. 23 15
108 136.00 precipitation 0.1 4320 > th dose dependent rect. 23 15
112 136.05 precipitation 0.1 4320 < th dose independent rect. 23 15
114 136.05 radiation 20.0 30 < th dose dependent rect. 6 1
115 136.05 precipitation 0.1 4320 < th dose dependent rect. 23 15
150 136.27 wind 9.0 14400 > th dose dependent rect. 23 1
155 136.34 wind 9.0 14400 > th dose independent rect. 23 1
171 136.41 humidity 90.0 4320 > th dose dependent rect. 11 1
172 136.42 precipitation 0.1 4320 < th dose independent sin 7 NA
173 136.42 precipitation 0.1 4320 < th dose dependent sin 7 NA
174 136.43 precipitation 0.1 4320 > th dose independent sin 7 NA
190 136.47 humidity 90.0 4320 > th dose independent rect. 8 5
200 136.51 humidity 90.0 4320 > th dose dependent rect. 17 2
202 136.52 radiation 40.0 14400 > th dose independent rect. 7 1
218 136.52 radiation 40.0 14400 > th dose dependent rect. 7 1
254 136.59 precipitation 0.1 4320 > th dose dependent sin 7 NA
274 136.71 humidity 90.0 4320 > th dose independent rect. 12 1
287 136.75 precipitation 0.1 4320 > th dose independent rect. 7 1
290 136.75 precipitation 0.1 4320 > th dose dependent rect. 7 1
296 136.79 humidity 90.0 4320 > th dose independent rect. 6 8
373 137.17 precipitation 0.1 4320 > th dose independent rect. 19 13
386 137.22 temperature 20.0 10 > th dose independent rect. 12 23
399 137.25 precipitation 0.1 4320 < th dose independent rect. 19 13
401 137.25 precipitation 0.1 4320 < th dose dependent rect. 19 13
419 137.34 precipitation 0.1 4320 < th dose independent rect. 19 16
421 137.34 precipitation 0.1 4320 < th dose dependent rect. 19 16
424 137.35 precipitation 0.1 4320 > th dose independent rect. 19 15
446 137.41 precipitation 0.1 4320 > th dose dependent rect. 19 13
454 137.44 humidity 90.0 1440 < th dose independent rect. 4 2
459 137.46 wind 9.0 14400 < th dose independent rect. 23 1
480 137.55 humidity 90.0 4320 < th dose independent rect. 6 8
490 137.57 precipitation 0.1 4320 < th dose independent rect. 13 19
492 137.57 precipitation 0.1 4320 < th dose dependent rect. 13 19
494 137.58 precipitation 0.1 14400 < th dose independent rect. 1 2
496 137.58 precipitation 0.1 14400 < th dose dependent rect. 1 2
500 137.60 precipitation 0.1 4320 > th dose independent rect. 13 19
501 137.60 precipitation 0.1 4320 > th dose independent rect. 19 21
517 137.63 precipitation 0.1 4320 < th dose independent rect. 7 1
519 137.63 precipitation 0.1 4320 < th dose dependent rect. 7 1
523 137.64 precipitation 0.1 4320 < th dose independent rect. 19 21
524 137.64 precipitation 0.1 4320 < th dose dependent rect. 19 21
527 137.65 precipitation 0.1 4320 > th dose dependent rect. 19 15
538 137.69 humidity 90.0 4320 < th dose independent rect. 8 5
550 137.75 precipitation 0.1 14400 > th dose independent rect. 1 2
554 137.76 temperature 20.0 1440 < th dose independent rect. 21 3
583 137.82 precipitation 0.1 14400 > th dose dependent rect. 1 2
597 137.85 precipitation 0.1 4320 > th dose dependent rect. 19 21
613 137.90 temperature 20.0 1440 > th dose independent rect. 21 3
632 137.95 humidity 90.0 4320 > th dose independent rect. 6 13
713 138.09 humidity 90.0 4320 > th dose dependent rect. 15 5
754 138.15 precipitation 0.1 4320 > th dose dependent rect. 13 19
778 138.19 temperature 20.0 1440 < th dose independent rect. 6 1
779 138.19 radiation 30.0 4320 < th dose independent rect. 1 7
784 138.20 atmosphere 1000.0 14400 < th dose dependent rect. 8 1
790 138.22 humidity 80.0 30 > th dose independent rect. 6 1
795 138.22 humidity 90.0 1440 < th dose dependent rect. 4 1
799 138.23 radiation 30.0 4320 < th dose independent rect. 6 2
812 138.24 atmosphere 1000.0 30 > th dose independent rect. 6 1
814 138.24 radiation 30.0 4320 < th dose independent rect. 17 15
831 138.26 radiation 1.0 14400 > th dose independent rect. 11 1
832 138.26 radiation 30.0 4320 < th dose independent rect. 4 4
838 138.26 precipitation 0.1 4320 < th dose independent rect. 10 22
846 138.26 precipitation 0.1 4320 < th dose dependent rect. 10 22
847 138.27 wind 9.0 1440 < th dose independent rect. 7 1
849 138.27 temperature 10.0 1440 > th dose independent rect. 7 1
853 138.27 temperature 30.0 1440 < th dose independent rect. 7 1
857 138.27 humidity 50.0 1440 > th dose independent rect. 7 1
862 138.27 atmosphere 995.0 1440 > th dose independent rect. 7 1
863 138.27 atmosphere 1015.0 1440 < th dose independent rect. 7 1
869 138.27 temperature 10.0 1440 > th dose independent rect. 8 23
877 138.28 radiation 30.0 4320 < th dose independent rect. 23 9
942 138.35 humidity 90.0 30 < th dose independent rect. 6 1
957 138.37 wind 5.0 30 < th dose independent rect. 6 1
960 138.37 temperature 10.0 30 > th dose independent rect. 6 1
963 138.37 temperature 30.0 30 < th dose independent rect. 6 1
964 138.37 humidity 50.0 30 > th dose independent rect. 6 1
972 138.37 precipitation 0.1 30 < th dose independent rect. 6 1
974 138.37 temperature 10.0 30 > th dose independent rect. 7 23
975 138.37 precipitation 0.1 30 < th dose dependent rect. 6 1
979 138.38 radiation 1.0 14400 < th dose independent rect. 11 1
982 138.38 radiation 1.0 14400 < th dose dependent rect. 11 1
996 138.40 radiation 1.0 30 > th dose independent rect. 6 1