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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0455600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Serine/threonine protein phosphatase PP1-alpha catalytic subunit (EC 3.1.3.16) (PP-1A). Splice isoform 1.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.65 (0.0516) R2 : 0.457
β1 : -0.542 (0.203) R2dD : 0.0103 R2D : 0.0468
β2 : 1 (0.134) R2dC : 0.069 R2C : 0.0904
β3 : 1.69 (0.218) R2dE : 0.0945 R2E : 0.229
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -5.09 (0.591) R2dD*E : 0.127 R2D*E : 0.239
γ1 : -0.031 (0.112) R2dN8 : -3.63e-06 R2N8 : -0.00285
σ : 0.937
deviance : 404.42
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C
peak time of C : 5.16
E
wheather : temperature
threshold : 19.9
memory length : 254
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 21.8
open length of G : 20.4

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
402.74 0.943 3.66 -0.554 0.984 1.78 -1.04 -4.79 -0.021 4.86 19.9 266 21.9 20.4
441.54 0.979 3.73 -0.965 0.921 2.98 -2.19 -- -0.0817 4.34 19.39 347 22.4 21
404.42 0.937 3.65 -0.542 1 1.69 -- -5.09 -0.031 5.16 19.9 254 21.8 20.4
455.68 0.994 3.75 -0.913 0.915 2.96 -- -- -0.101 4.51 19.36 348 22.4 21.2
451.77 0.99 3.67 -0.479 -- 2.13 -- -4.79 0.0292 -- 19.68 253 21.9 20.2
575.85 1.12 3.82 -1.73 1.21 -- -2.44 -- -0.478 4.92 -- -- -- --
590.64 1.14 3.82 -1.72 1.2 -- -- -- -0.465 5.2 -- -- -- --
496.76 1.04 3.74 -0.833 -- 3.12 -- -- -0.0417 -- 19.4 329 22 21.5
474.78 1.01 3.72 -- 0.917 3.19 -- -- 0.0399 4.7 19.31 355 22.4 22.1
665.7 1.21 3.83 -1.68 -- -- -- -- -0.435 -- -- -- -- --
668.84 1.21 3.77 -- 1.17 -- -- -- -0.274 5.26 -- -- -- --
512.71 1.05 3.71 -- -- 3.35 -- -- 0.084 -- 19.3 328 22.1 22.3
740.2 1.27 3.79 -- -- -- -- -- -0.249 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 403.82 temperature 20 270 < th dose independent rect. 22 20
8 411.44 temperature 20 270 > th dose independent sin 6 NA
21 415.83 wind 3 43200 > th dose dependent rect. 8 1
25 416.80 temperature 20 270 > th dose independent rect. 16 23
26 416.93 temperature 20 270 > th dose independent rect. 18 23
28 417.59 wind 5 43200 < th dose independent rect. 7 3
34 418.02 wind 5 43200 > th dose independent rect. 7 3
52 419.50 temperature 20 270 > th dose independent rect. 2 23
73 421.16 temperature 20 270 < th dose independent sin 7 NA
87 421.95 wind 9 43200 < th dose dependent rect. 8 1
93 422.16 temperature 20 270 > th dose independent no NA NA
100 422.49 temperature 20 270 < th dose independent rect. 13 23
103 422.72 temperature 20 270 < th dose independent no NA NA
135 423.96 temperature 20 270 > th dose independent rect. 22 23
151 424.42 wind 9 43200 > th dose independent rect. 20 14
154 424.51 wind 9 43200 < th dose independent rect. 20 15
174 424.85 temperature 20 270 < th dose independent rect. 22 13
177 424.91 wind 9 43200 > th dose dependent rect. 20 12
194 425.16 temperature 20 270 > th dose independent rect. 21 16
220 425.73 wind 9 43200 < th dose dependent rect. 3 7
261 426.40 atmosphere 995 43200 > th dose independent rect. 6 7
319 427.03 wind 9 43200 > th dose dependent rect. 17 17
336 427.20 wind 9 43200 > th dose dependent sin 10 NA
381 427.70 temperature 20 270 < th dose independent rect. 3 23
444 428.26 atmosphere 995 43200 < th dose dependent rect. 4 12
462 428.39 wind 3 43200 < th dose dependent rect. 3 2
528 428.95 atmosphere 995 43200 < th dose dependent rect. 7 9
552 429.12 atmosphere 995 43200 < th dose dependent rect. 12 3
555 429.16 wind 9 43200 > th dose independent sin 9 NA
566 429.24 wind 9 43200 < th dose independent sin 9 NA
613 429.57 atmosphere 995 43200 < th dose dependent sin 1 NA
632 429.69 wind 9 43200 < th dose independent rect. 20 9
648 429.79 wind 3 43200 > th dose dependent sin 8 NA
744 430.41 wind 9 43200 < th dose independent rect. 23 12
759 430.47 wind 9 43200 > th dose dependent rect. 1 12
772 430.51 atmosphere 995 43200 > th dose independent rect. 7 2
773 430.51 temperature 20 14400 < th dose independent rect. 5 20
811 430.69 wind 9 43200 > th dose independent rect. 23 12
823 430.73 wind 9 43200 > th dose independent rect. 1 10
851 430.82 atmosphere 995 43200 < th dose dependent rect. 5 4
858 430.85 wind 3 43200 < th dose dependent rect. 6 13
926 431.09 wind 5 43200 < th dose independent sin 8 NA
927 431.09 temperature 10 4320 > th dose dependent rect. 10 1
929 431.10 atmosphere 995 43200 < th dose dependent rect. 7 18
955 431.22 temperature 20 14400 > th dose independent rect. 4 20