Os08g0452900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os08g0452900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 713.68 | 1.26 | 10.3 | -4.72 | 10.2 | 12.4 | 10.4 | 7.89 | -1.66 | 17.6 | 72.08 | 762 | 5.78 | -- |
| 727.09 | 1.26 | 10.2 | -4.61 | 9.32 | 10.9 | 4.97 | -- | -1.57 | 17.1 | 73.84 | 769 | 6.47 | -- |
| 926.26 | 1.42 | 10.2 | -4.61 | 9.89 | 12.4 | -- | 6.32 | -1.31 | 17.6 | 71 | 797 | 6.12 | -- |
| 779.76 | 1.3 | 10.2 | -4.7 | 9.31 | 11.1 | -- | -- | -1.58 | 17.1 | 72.44 | 784 | 6.49 | -- |
| 1145.47 | 1.58 | 9.97 | -5.1 | -- | -3.2 | -- | -2.72 | -1.29 | -- | 69.89 | 4126 | 4.67 | -- |
| 1028.47 | 1.5 | 9.94 | -5.1 | 3.68 | -- | 3.03 | -- | -1.37 | 12.7 | -- | -- | -- | -- |
| 1066.68 | 1.53 | 9.93 | -4.99 | 3.67 | -- | -- | -- | -1.35 | 12.6 | -- | -- | -- | -- |
| 1109.35 | 1.56 | 9.97 | -5.01 | -- | -3.51 | -- | -- | -1.31 | -- | 58.92 | 8887 | 5.04 | -- |
| 1328.87 | 1.7 | 10.1 | -- | 9.13 | 12.1 | -- | -- | -1.01 | 17.6 | 70.98 | 877 | 6.69 | -- |
| 1911.65 | 2.04 | 10 | -5.12 | -- | -- | -- | -- | -1.42 | -- | -- | -- | -- | -- |
| 1722.57 | 1.94 | 9.8 | -- | 3.75 | -- | -- | -- | -0.797 | 12.6 | -- | -- | -- | -- |
| 1642.66 | 1.89 | 9.95 | -- | -- | -3.89 | -- | -- | -0.677 | -- | 31 | 21600 | 5.71 | -- |
| 2602.44 | 2.38 | 9.87 | -- | -- | -- | -- | -- | -0.848 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 711.28 | humidity | 60 | 720 | > th | dose dependent | rect. | 17 | 6 |
| 5 | 723.28 | humidity | 90 | 720 | < th | dose dependent | rect. | 18 | 3 |
| 7 | 725.43 | humidity | 90 | 720 | < th | dose dependent | rect. | 17 | 7 |
| 10 | 726.74 | humidity | 80 | 720 | > th | dose independent | rect. | 16 | 6 |
| 28 | 735.30 | humidity | 70 | 720 | > th | dose dependent | rect. | 19 | 2 |
| 29 | 735.55 | humidity | 80 | 720 | < th | dose independent | rect. | 16 | 5 |
| 41 | 740.62 | humidity | 70 | 720 | > th | dose independent | sin | 12 | NA |
| 65 | 746.36 | humidity | 70 | 720 | > th | dose independent | rect. | 16 | 17 |
| 99 | 756.21 | temperature | 25 | 720 | > th | dose dependent | rect. | 18 | 3 |
| 201 | 770.99 | humidity | 50 | 720 | > th | dose dependent | rect. | 16 | 16 |
| 231 | 774.88 | humidity | 50 | 720 | > th | dose dependent | sin | 14 | NA |
| 277 | 779.73 | humidity | 70 | 720 | < th | dose independent | rect. | 18 | 14 |
| 325 | 782.66 | humidity | 70 | 720 | < th | dose independent | sin | 12 | NA |
| 341 | 783.86 | temperature | 25 | 720 | > th | dose dependent | sin | 12 | NA |
| 354 | 785.20 | temperature | 30 | 720 | < th | dose independent | rect. | 16 | 16 |
| 391 | 788.03 | humidity | 90 | 720 | < th | dose dependent | sin | 15 | NA |
| 423 | 790.65 | humidity | 80 | 720 | > th | dose independent | sin | 17 | NA |
| 447 | 792.74 | humidity | 80 | 720 | < th | dose dependent | sin | 12 | NA |
| 494 | 796.21 | humidity | 80 | 720 | < th | dose independent | sin | 18 | NA |
| 587 | 800.78 | humidity | 70 | 720 | < th | dose independent | rect. | 15 | 18 |
| 677 | 804.87 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 9 |
| 718 | 806.92 | radiation | 1 | 720 | > th | dose independent | rect. | 8 | 22 |
| 738 | 808.00 | humidity | 80 | 720 | > th | dose independent | rect. | 6 | 16 |
| 772 | 809.26 | temperature | 30 | 720 | > th | dose independent | rect. | 17 | 2 |
| 848 | 810.76 | humidity | 70 | 90 | > th | dose dependent | rect. | 19 | 8 |
| 903 | 812.31 | temperature | 30 | 720 | < th | dose independent | sin | 12 | NA |
| 986 | 814.96 | radiation | 1 | 720 | > th | dose independent | rect. | 9 | 10 |