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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0452100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Proteinase inhibitor, propeptide domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.76 (0.0423) R2 : 0.418
β1 : -2.49 (0.179) R2dD : 0.365 R2D : 0.0527
β2 : 2.05 (0.157) R2dC : 0.492 R2C : -0.0412
β3 : 1.73 (0.188) R2dE : 0.256 R2E : -0.391
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -4.85 (0.683) R2dD*E : 0.09 R2D*E : -0.0959
γ1 : -0.71 (0.0944) R2dN8 : 0.111 R2N8 : -0.0544
σ : 0.768
deviance : 271.7
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_____
C
peak time of C : 7.69
E
wheather : temperature
threshold : 15.65
memory length : 10
response mode : > th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 7.41
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
267.88 0.769 5.76 -2.43 1.73 1.52 1.71 -3.51 -0.698 7.7 17.46 10 6.57 --
276.09 0.774 5.7 -1.92 2.06 1.81 2.95 -- -0.539 8.2 14.4 4 6.91 --
271.7 0.768 5.76 -2.49 2.05 1.73 -- -4.85 -0.71 7.69 15.65 10 7.41 --
301.19 0.808 5.69 -1.83 1.98 1.67 -- -- -0.524 8.09 13.92 5 6.85 --
336.18 0.859 5.71 -1.64 -- -1.17 -- -2.55 -0.309 -- 4.223 14 11.4 --
314.61 0.832 5.67 -1.65 1.16 -- 2.24 -- -0.33 6.48 -- -- -- --
325.44 0.845 5.68 -1.62 1.19 -- -- -- -0.34 5.95 -- -- -- --
328.26 0.844 5.7 -1.61 -- -1.25 -- -- -0.323 -- -98.77 441 15.8 --
385.64 0.92 5.64 -- 1.59 0.99 -- -- -0.256 7.55 13.92 5 6.85 --
398.76 0.933 5.7 -1.59 -- -- -- -- -0.312 -- -- -- -- --
394.83 0.929 5.64 -- 1.17 -- -- -- -0.159 6.02 -- -- -- --
394.81 0.925 5.67 -- -- -1.18 -- -- -0.156 -- -513.1 812 18.8 --
465.22 1.01 5.66 -- -- -- -- -- -0.136 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 267.30 temperature 20 90 > th dose dependent rect. 17 14
2 269.51 temperature 15 10 > th dose dependent sin 13 NA
12 271.23 temperature 25 90 > th dose independent rect. 17 14
41 274.12 temperature 25 90 > th dose dependent rect. 21 10
66 276.15 temperature 20 720 > th dose dependent rect. 11 12
105 277.72 temperature 20 90 > th dose dependent rect. 17 10
111 277.93 temperature 20 90 > th dose independent rect. 21 10
112 277.94 temperature 15 270 > th dose dependent rect. 14 10
159 279.36 temperature 20 90 > th dose independent sin 13 NA
177 279.78 temperature 25 720 > th dose independent rect. 11 20
196 280.15 temperature 20 720 > th dose dependent rect. 20 3
214 280.44 temperature 25 720 > th dose independent rect. 11 14
396 282.63 temperature 25 270 > th dose independent rect. 15 9
397 282.63 temperature 10 720 > th dose dependent rect. 11 7
433 283.07 temperature 25 720 > th dose independent sin 18 NA
595 284.40 temperature 20 30 > th dose independent rect. 17 11
608 284.49 temperature 20 720 > th dose independent rect. 20 3
621 284.59 temperature 25 90 > th dose independent rect. 17 9
786 285.90 atmosphere 1010 90 < th dose independent rect. 17 14
948 286.93 temperature 25 720 < th dose independent rect. 12 22
949 286.93 temperature 25 720 < th dose independent rect. 21 23