Os08g0451000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Sec34-like protein family protein.
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Os08g0451000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Sec34-like protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 20.99 | 0.213 | 9.44 | -0.466 | 0.317 | 56.1 | -0.38 | 117 | 0.377 | 0.203 | 15 | 90 | -- | -- |
| 21 | 0.215 | 9.92 | 0.536 | 0.315 | 0.92 | -0.369 | -- | 0.376 | 0.204 | 15 | 90 | -- | -- |
| 21.62 | 0.217 | 9.44 | -0.463 | 0.318 | 56.1 | -- | 117 | 0.378 | 0.235 | 15.01 | 94 | -- | -- |
| 21.58 | 0.218 | 9.92 | 0.554 | 0.315 | 0.822 | -- | -- | 0.379 | 0.237 | 14.52 | 382 | -- | -- |
| 27.98 | 0.246 | 9.44 | -0.428 | -- | 56.2 | -- | 117 | 0.385 | -- | 15.01 | 86 | -- | -- |
| 22.59 | 0.223 | 9.92 | 0.576 | 0.3 | -- | -0.26 | -- | 0.386 | 0.224 | -- | -- | -- | -- |
| 22.88 | 0.224 | 9.92 | 0.586 | 0.301 | -- | -- | -- | 0.387 | 0.248 | -- | -- | -- | -- |
| 27.67 | 0.245 | 9.92 | 0.559 | -- | 0.651 | -- | -- | 0.382 | -- | 14.67 | 731 | -- | -- |
| 29.1 | 0.251 | 9.94 | -- | 0.316 | 1.08 | -- | -- | 0.312 | 0.244 | 14.8 | 728 | -- | -- |
| 28.58 | 0.25 | 9.91 | 0.596 | -- | -- | -- | -- | 0.392 | -- | -- | -- | -- | -- |
| 31.93 | 0.264 | 9.93 | -- | 0.309 | -- | -- | -- | 0.322 | 0.35 | -- | -- | -- | -- |
| 28.39 | 0.248 | 9.95 | -- | -- | 0.49 | -- | -- | 0.208 | -- | 18.46 | 47520 | -- | -- |
| 37.95 | 0.288 | 9.93 | -- | -- | -- | -- | -- | 0.326 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 20.57 | radiation | 40.0 | 10 | > th | dose independent | rect. | 13 | 23 |
| 2 | 20.59 | temperature | 15.0 | 720 | > th | dose independent | rect. | 12 | 10 |
| 3 | 20.62 | temperature | 15.0 | 720 | > th | dose independent | rect. | 18 | 6 |
| 5 | 20.64 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 19 | 4 |
| 7 | 20.64 | radiation | 40.0 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 8 | 20.66 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 12 | 1 |
| 9 | 20.66 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 21 | 2 |
| 10 | 20.66 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 12 | 1 |
| 11 | 20.66 | atmosphere | 1010.0 | 10 | < th | dose dependent | rect. | 19 | 13 |
| 12 | 20.67 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 16 | 20.68 | temperature | 15.0 | 30 | > th | dose independent | rect. | 5 | 23 |
| 19 | 20.69 | radiation | 30.0 | 10 | > th | dose dependent | rect. | 7 | 5 |
| 36 | 20.70 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 19 | 4 |
| 38 | 20.71 | atmosphere | 1000.0 | 30 | > th | dose dependent | rect. | 16 | 13 |
| 41 | 20.72 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 15 | 2 |
| 47 | 20.73 | temperature | 20.0 | 720 | < th | dose dependent | rect. | 12 | 13 |
| 52 | 20.75 | temperature | 15.0 | 720 | > th | dose independent | rect. | 10 | 14 |
| 55 | 20.76 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 12 | 1 |
| 59 | 20.76 | temperature | 20.0 | 90 | < th | dose dependent | rect. | 19 | 10 |
| 73 | 20.78 | temperature | 20.0 | 270 | < th | dose dependent | rect. | 18 | 7 |
| 91 | 20.79 | temperature | 20.0 | 720 | > th | dose independent | rect. | 12 | 18 |
| 111 | 20.80 | radiation | 40.0 | 10 | > th | dose independent | rect. | 9 | 3 |
| 130 | 20.80 | temperature | 15.0 | 30 | > th | dose independent | rect. | 23 | 23 |
| 131 | 20.80 | temperature | 15.0 | 4320 | < th | dose dependent | rect. | 2 | 2 |
| 145 | 20.81 | atmosphere | 1005.0 | 270 | > th | dose dependent | rect. | 15 | 15 |
| 146 | 20.81 | atmosphere | 1005.0 | 10 | > th | dose dependent | rect. | 16 | 18 |
| 147 | 20.82 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 12 | 1 |
| 152 | 20.82 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 6 | 14 |
| 153 | 20.82 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 171 | 20.83 | atmosphere | 1005.0 | 270 | > th | dose dependent | rect. | 15 | 17 |
| 175 | 20.84 | radiation | 40.0 | 10 | < th | dose independent | rect. | 5 | 11 |
| 176 | 20.84 | temperature | 20.0 | 270 | < th | dose dependent | sin | 14 | NA |
| 178 | 20.84 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 20 | 4 |
| 196 | 20.85 | temperature | 20.0 | 720 | > th | dose independent | rect. | 18 | 12 |
| 238 | 20.87 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 242 | 20.87 | atmosphere | 1005.0 | 10 | > th | dose dependent | sin | 9 | NA |
| 257 | 20.88 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 15 | 2 |
| 258 | 20.88 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 10 | 3 |
| 264 | 20.88 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 15 | 2 |
| 290 | 20.89 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 13 | 1 |
| 291 | 20.89 | radiation | 40.0 | 4320 | > th | dose dependent | rect. | 11 | 1 |
| 311 | 20.90 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 13 | 4 |
| 342 | 20.91 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 6 | 11 |
| 343 | 20.91 | temperature | 15.0 | 10 | > th | dose independent | rect. | 9 | 23 |
| 345 | 20.91 | temperature | 20.0 | 720 | < th | dose dependent | sin | 18 | NA |
| 351 | 20.91 | atmosphere | 1015.0 | 1440 | > th | dose dependent | rect. | 24 | 3 |
| 461 | 20.94 | precipitation | 0.1 | 720 | > th | dose independent | rect. | 15 | 1 |
| 472 | 20.94 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 15 | 1 |
| 536 | 20.96 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 15 | 5 |
| 547 | 20.96 | temperature | 20.0 | 720 | < th | dose independent | rect. | 12 | 18 |
| 594 | 20.97 | temperature | 20.0 | 720 | < th | dose independent | rect. | 13 | 1 |
| 596 | 20.97 | atmosphere | 1015.0 | 1440 | > th | dose independent | rect. | 24 | 4 |
| 613 | 20.97 | temperature | 20.0 | 720 | < th | dose dependent | rect. | 13 | 1 |
| 615 | 20.97 | radiation | 40.0 | 4320 | > th | dose dependent | rect. | 7 | 5 |
| 655 | 20.98 | humidity | 90.0 | 720 | > th | dose independent | rect. | 12 | 1 |
| 656 | 20.98 | radiation | 40.0 | 10 | > th | dose independent | rect. | 11 | 1 |
| 677 | 20.98 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 6 | 17 |
| 679 | 20.98 | radiation | 30.0 | 10 | > th | dose dependent | sin | 8 | NA |
| 684 | 20.98 | temperature | 15.0 | 1440 | < th | dose dependent | rect. | 23 | 2 |
| 700 | 20.98 | temperature | 20.0 | 30 | < th | dose dependent | rect. | 15 | 9 |
| 722 | 20.99 | temperature | 15.0 | 10 | > th | dose independent | sin | 7 | NA |
| 724 | 20.99 | temperature | 15.0 | 10 | > th | dose independent | sin | 9 | NA |
| 758 | 20.99 | temperature | 15.0 | 10 | > th | dose independent | sin | 1 | NA |
| 770 | 20.99 | temperature | 15.0 | 90 | > th | dose independent | no | NA | NA |
| 772 | 20.99 | temperature | 15.0 | 90 | < th | dose independent | sin | 7 | NA |
| 820 | 20.99 | temperature | 15.0 | 90 | < th | dose independent | no | NA | NA |
| 825 | 20.99 | temperature | 15.0 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 827 | 20.99 | temperature | 15.0 | 1440 | < th | dose independent | rect. | 9 | 1 |
| 831 | 20.99 | atmosphere | 1015.0 | 1440 | > th | dose independent | rect. | 1 | 1 |
| 988 | 20.99 | temperature | 15.0 | 270 | < th | dose independent | rect. | 24 | 10 |