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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0449400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.99 (0.0169) R2 : 0.0246
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.121 (0.0356) R2dN8 : 0.0317 R2N8 : 0.0246
σ : 0.319
deviance : 46.59
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
43.85 0.311 2.98 -0.0714 0.11 0.0229 0.705 0.778 0.119 14.5 83.89 283 -- --
45.5 0.317 2.99 -0.0244 0.0219 -0.0729 0.232 -- 0.118 12.5 82 517 -- --
44.34 0.31 2.99 -0.0888 0.0701 0.0813 -- 0.87 0.116 15 83.43 1018 -- --
45.29 0.313 2.98 -0.0382 0.0556 0.232 -- -- 0.147 14.8 82 2485 -- --
44.54 0.311 2.98 -0.0957 -- 0.127 -- 0.904 0.118 -- 83 1019 -- --
45.82 0.317 2.99 -0.0233 0.0893 -- 0.256 -- 0.119 13.1 -- -- -- --
46.09 0.318 2.99 -0.0141 0.0893 -- -- -- 0.121 13.3 -- -- -- --
45.43 0.314 2.98 -0.03 -- 0.267 -- -- 0.147 -- 81 2511 -- --
45.31 0.314 2.98 -- 0.0547 0.229 -- -- 0.151 14.6 82.19 2485 -- --
46.58 0.319 2.99 -0.0176 -- -- -- -- 0.119 -- -- -- -- --
46.09 0.318 2.99 -- 0.0896 -- -- -- 0.122 13.3 -- -- -- --
45.46 0.314 2.98 -- -- 0.265 -- -- 0.15 -- 81.07 2511 -- --
46.59 0.319 2.99 -- -- -- -- -- 0.121 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 37.21 wind 1.0 90 < th dose dependent rect. 13 1
4 37.50 temperature 30.0 10 > th dose independent rect. 14 1
10 37.96 wind 1.0 90 < th dose independent rect. 13 1
37 40.80 wind 1.0 30 < th dose dependent rect. 10 4
45 42.62 wind 1.0 30 < th dose independent rect. 10 4
52 43.15 humidity 90.0 10 < th dose dependent rect. 1 4
53 43.22 humidity 90.0 10 < th dose dependent rect. 2 1
62 43.36 humidity 80.0 30 < th dose independent rect. 1 1
97 43.49 wind 1.0 270 < th dose independent rect. 10 2
98 43.49 wind 1.0 270 < th dose dependent rect. 10 1
101 43.54 humidity 80.0 10 > th dose independent rect. 16 19
104 43.58 humidity 80.0 10 > th dose independent rect. 20 15
108 43.62 humidity 80.0 10 > th dose independent sin 10 NA
118 43.72 wind 3.0 30 < th dose independent rect. 10 9
123 43.74 humidity 70.0 30 < th dose independent rect. 10 1
127 43.76 humidity 80.0 30 < th dose dependent rect. 10 1
128 43.77 wind 1.0 30 < th dose independent rect. 10 1
129 43.77 temperature 10.0 1440 > th dose independent rect. 11 1
133 43.77 atmosphere 995.0 1440 > th dose independent rect. 11 1
136 43.77 precipitation 0.1 1440 < th dose independent rect. 11 1
137 43.77 temperature 10.0 1440 > th dose independent rect. 12 23
140 43.77 wind 1.0 30 < th dose dependent rect. 10 1
141 43.77 temperature 25.0 10 > th dose dependent rect. 13 1
142 43.77 precipitation 0.1 1440 < th dose dependent rect. 11 1
146 43.78 temperature 25.0 30 > th dose dependent rect. 10 1
155 43.82 temperature 25.0 30 > th dose independent rect. 10 1
157 43.82 humidity 80.0 720 > th dose independent rect. 5 18
174 43.88 wind 1.0 270 < th dose independent rect. 10 9
183 43.89 wind 5.0 30 < th dose dependent rect. 10 1
185 43.89 atmosphere 1005.0 30 > th dose dependent rect. 10 1
195 43.91 atmosphere 1005.0 30 > th dose independent rect. 10 1
202 43.92 radiation 20.0 30 > th dose independent rect. 10 1
209 43.92 humidity 80.0 270 > th dose dependent rect. 6 21
212 43.93 radiation 40.0 30 < th dose independent rect. 10 1
217 43.93 wind 5.0 30 < th dose dependent rect. 10 9
221 43.94 humidity 60.0 30 > th dose independent rect. 10 1
222 43.94 atmosphere 1010.0 30 < th dose independent rect. 10 1
228 43.95 temperature 10.0 30 > th dose independent rect. 10 1
232 43.95 atmosphere 995.0 30 > th dose independent rect. 10 1
235 43.95 precipitation 0.1 30 < th dose independent rect. 10 1
238 43.95 temperature 10.0 30 > th dose independent rect. 11 23
239 43.95 radiation 1.0 30 > th dose dependent rect. 10 1
240 43.95 precipitation 0.1 30 < th dose dependent rect. 10 1
242 43.96 wind 1.0 30 > th dose independent rect. 10 1
243 43.96 temperature 30.0 30 < th dose independent rect. 10 1
247 43.96 humidity 80.0 270 > th dose independent rect. 14 20
268 43.98 humidity 70.0 270 > th dose dependent rect. 13 21
278 44.00 humidity 80.0 10 > th dose independent rect. 12 23
296 44.02 temperature 30.0 10 < th dose independent rect. 11 23
302 44.03 humidity 80.0 720 < th dose independent rect. 17 5
315 44.04 atmosphere 1015.0 30 < th dose dependent rect. 10 1
316 44.04 radiation 40.0 30 < th dose dependent rect. 10 1
331 44.07 humidity 80.0 720 < th dose independent rect. 7 15
350 44.09 humidity 80.0 720 > th dose independent sin 20 NA
359 44.09 humidity 70.0 720 > th dose dependent rect. 6 17
403 44.12 humidity 80.0 10 > th dose independent rect. 5 23
415 44.12 humidity 90.0 270 < th dose dependent rect. 15 20
427 44.13 humidity 80.0 720 < th dose independent rect. 16 19
436 44.13 humidity 90.0 270 < th dose dependent sin 11 NA
449 44.14 humidity 80.0 270 > th dose independent rect. 8 23
469 44.15 humidity 80.0 270 > th dose independent rect. 19 23
484 44.16 humidity 80.0 270 > th dose independent no NA NA
488 44.16 humidity 80.0 720 > th dose independent rect. 14 9
526 44.17 wind 1.0 270 < th dose dependent rect. 10 8
569 44.18 humidity 70.0 270 > th dose dependent rect. 19 23
572 44.19 humidity 80.0 720 > th dose independent rect. 11 12
583 44.19 wind 1.0 30 > th dose dependent rect. 10 1
645 44.21 humidity 70.0 270 > th dose dependent no NA NA
675 44.22 humidity 50.0 30 > th dose dependent rect. 10 1
704 44.23 humidity 80.0 270 > th dose independent rect. 16 23
706 44.23 humidity 80.0 270 < th dose independent rect. 12 23
718 44.24 humidity 80.0 720 < th dose independent sin 22 NA
783 44.25 humidity 50.0 270 > th dose dependent sin 13 NA
835 44.26 humidity 90.0 10 < th dose dependent rect. 21 9
882 44.27 humidity 70.0 720 > th dose dependent sin 20 NA
886 44.27 humidity 50.0 720 > th dose dependent rect. 14 9
945 44.28 humidity 90.0 10 < th dose dependent rect. 18 12
961 44.29 humidity 80.0 720 < th dose independent no NA NA