Os08g0449300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, putative npRNA.
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Os08g0449300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, putative npRNA.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 78.1 | 0.415 | 3.01 | -0.285 | 0.136 | 1.28 | 0.114 | -10.6 | 0.0276 | 15.1 | 30.19 | 7 | -- | -- |
| 79.98 | 0.42 | 2.97 | 0.0489 | 0.144 | 0.0341 | 0.0878 | -- | 0.0222 | 15.1 | 29.63 | 23 | -- | -- |
| 78.14 | 0.412 | 3.01 | -0.28 | 0.136 | 1.28 | -- | -10.6 | 0.0288 | 15.3 | 30.2 | 6 | -- | -- |
| 79.97 | 0.419 | 2.97 | 0.054 | 0.151 | -0.213 | -- | -- | 0.0212 | 15.2 | 34.7 | 9 | -- | -- |
| 79.1 | 0.414 | 3.01 | -0.298 | -- | 1.37 | -- | -10.5 | 0.0287 | -- | 30.1 | 6 | -- | -- |
| 79.99 | 0.419 | 2.97 | 0.0508 | 0.148 | -- | 0.095 | -- | 0.0211 | 15.1 | -- | -- | -- | -- |
| 80.02 | 0.419 | 2.97 | 0.0528 | 0.149 | -- | -- | -- | 0.0217 | 15.2 | -- | -- | -- | -- |
| 80.94 | 0.419 | 2.97 | 0.036 | -- | 0.158 | -- | -- | 0.0265 | -- | 30.51 | 214 | -- | -- |
| 79.74 | 0.418 | 2.97 | -- | 0.162 | -0.312 | -- | -- | 0.0113 | 15.2 | 32.9 | 12 | -- | -- |
| 81.28 | 0.421 | 2.97 | 0.0464 | -- | -- | -- | -- | 0.0177 | -- | -- | -- | -- | -- |
| 80.09 | 0.419 | 2.97 | -- | 0.148 | -- | -- | -- | 0.0158 | 15.2 | -- | -- | -- | -- |
| 80.17 | 0.417 | 2.98 | -- | -- | 0.206 | -- | -- | -0.00859 | -- | 23.13 | 175 | -- | -- |
| 81.33 | 0.421 | 2.97 | -- | -- | -- | -- | -- | 0.0126 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 74.01 | humidity | 60 | 30 | < th | dose dependent | rect. | 17 | 18 |
| 5 | 74.41 | humidity | 60 | 10 | < th | dose independent | rect. | 10 | 1 |
| 7 | 74.41 | humidity | 60 | 10 | < th | dose dependent | rect. | 10 | 1 |
| 9 | 74.42 | humidity | 60 | 10 | < th | dose independent | rect. | 17 | 18 |
| 131 | 74.54 | humidity | 70 | 1440 | < th | dose dependent | rect. | 8 | 1 |
| 137 | 74.63 | humidity | 60 | 1440 | > th | dose independent | rect. | 6 | 3 |
| 144 | 74.69 | humidity | 60 | 1440 | > th | dose independent | rect. | 21 | 12 |
| 146 | 74.74 | humidity | 70 | 1440 | < th | dose independent | rect. | 8 | 1 |
| 152 | 74.88 | humidity | 60 | 270 | < th | dose independent | rect. | 8 | 1 |
| 178 | 74.88 | humidity | 60 | 270 | < th | dose dependent | rect. | 8 | 1 |
| 205 | 74.91 | humidity | 60 | 1440 | > th | dose independent | rect. | 4 | 5 |
| 241 | 75.00 | wind | 1 | 10 | < th | dose independent | rect. | 9 | 3 |
| 261 | 75.03 | wind | 1 | 10 | < th | dose dependent | rect. | 9 | 1 |
| 303 | 75.09 | wind | 1 | 10 | < th | dose independent | rect. | 9 | 1 |
| 305 | 75.09 | radiation | 40 | 10 | > th | dose dependent | rect. | 9 | 1 |
| 416 | 75.20 | wind | 1 | 10 | < th | dose dependent | rect. | 8 | 10 |
| 422 | 75.21 | wind | 1 | 10 | < th | dose dependent | rect. | 9 | 7 |
| 534 | 75.41 | radiation | 40 | 10 | > th | dose independent | rect. | 9 | 1 |
| 581 | 75.48 | humidity | 60 | 10 | > th | dose independent | sin | 10 | NA |
| 583 | 75.49 | wind | 1 | 10 | < th | dose independent | rect. | 9 | 9 |
| 765 | 75.79 | humidity | 60 | 10 | < th | dose independent | sin | 10 | NA |
| 930 | 75.99 | wind | 1 | 10 | < th | dose independent | sin | 20 | NA |
| 993 | 76.06 | wind | 1 | 10 | > th | dose independent | sin | 20 | NA |