Os08g0446400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Leucine rich repeat, N-terminal domain containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os08g0446400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Leucine rich repeat, N-terminal domain containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 85.16 | 0.434 | 3.25 | 0.0521 | 0.211 | -0.118 | 0.203 | -1.32 | -0.0132 | 1.28 | 69 | 1208 | -- | -- |
| 87.05 | 0.435 | 3.23 | 0.199 | 0.173 | -0.215 | 0.0127 | -- | 0.0274 | 1.29 | 71.23 | 2634 | -- | -- |
| 85.3 | 0.43 | 3.25 | 0.0476 | 0.208 | -0.111 | -- | -1.26 | -0.0146 | 1.45 | 69.27 | 1218 | -- | -- |
| 86.23 | 0.432 | 3.21 | 0.223 | 0.235 | -0.379 | -- | -- | 0.102 | 1.12 | 75.9 | 2573 | -- | -- |
| 87.6 | 0.436 | 3.25 | 0.0518 | -- | -0.0534 | -- | -1.18 | -0.0111 | -- | 69.66 | 1379 | -- | -- |
| 89.63 | 0.444 | 3.22 | 0.18 | 0.166 | -- | -0.079 | -- | 0.0208 | 1.71 | -- | -- | -- | -- |
| 89.65 | 0.443 | 3.22 | 0.182 | 0.166 | -- | -- | -- | 0.0213 | 1.66 | -- | -- | -- | -- |
| 87.84 | 0.437 | 3.21 | 0.191 | -- | -0.43 | -- | -- | 0.0934 | -- | 75 | 3277 | -- | -- |
| 87.14 | 0.435 | 3.22 | -- | 0.248 | -0.449 | -- | -- | 0.039 | 1.27 | 76.02 | 2584 | -- | -- |
| 91.34 | 0.447 | 3.22 | 0.189 | -- | -- | -- | -- | 0.025 | -- | -- | -- | -- | -- |
| 90.53 | 0.445 | 3.23 | -- | 0.17 | -- | -- | -- | 0.000943 | 1.69 | -- | -- | -- | -- |
| 88.73 | 0.439 | 3.21 | -- | -- | -0.457 | -- | -- | 0.0855 | -- | 76.12 | 3316 | -- | -- |
| 92.28 | 0.448 | 3.23 | -- | -- | -- | -- | -- | 0.00396 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 81.23 | humidity | 50.0 | 4320 | < th | dose independent | rect. | 17 | 17 |
| 2 | 81.24 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 17 | 7 |
| 3 | 81.25 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 17 | 13 |
| 4 | 81.26 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 17 | 5 |
| 5 | 81.26 | humidity | 50.0 | 4320 | < th | dose dependent | rect. | 17 | 17 |
| 7 | 81.27 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 17 | 9 |
| 15 | 81.33 | humidity | 50.0 | 4320 | < th | dose dependent | rect. | 17 | 1 |
| 31 | 81.35 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 32 | 81.36 | humidity | 50.0 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 69 | 81.54 | wind | 3.0 | 30 | > th | dose independent | rect. | 12 | 1 |
| 70 | 81.55 | wind | 1.0 | 30 | > th | dose dependent | rect. | 12 | 1 |
| 87 | 81.66 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 91 | 81.66 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 94 | 81.66 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 14 | 23 |
| 98 | 81.69 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 12 | 1 |
| 99 | 81.72 | radiation | 40.0 | 30 | > th | dose independent | rect. | 12 | 1 |
| 100 | 81.72 | radiation | 1.0 | 30 | > th | dose dependent | rect. | 12 | 1 |
| 102 | 81.73 | radiation | 30.0 | 30 | > th | dose dependent | rect. | 12 | 1 |
| 119 | 81.83 | humidity | 50.0 | 720 | < th | dose dependent | rect. | 17 | 1 |
| 136 | 81.84 | humidity | 50.0 | 30 | > th | dose independent | rect. | 12 | 1 |
| 155 | 81.85 | humidity | 50.0 | 720 | < th | dose independent | rect. | 17 | 1 |
| 173 | 81.86 | wind | 9.0 | 30 | < th | dose independent | rect. | 12 | 1 |
| 174 | 81.86 | temperature | 10.0 | 30 | > th | dose independent | rect. | 12 | 1 |
| 177 | 81.86 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 12 | 1 |
| 178 | 81.86 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 12 | 1 |
| 179 | 81.86 | radiation | 1.0 | 30 | > th | dose independent | rect. | 12 | 1 |
| 181 | 81.86 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 12 | 1 |
| 198 | 81.86 | temperature | 10.0 | 30 | > th | dose independent | rect. | 13 | 23 |
| 199 | 81.86 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 12 | 1 |
| 202 | 81.87 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 12 | 1 |
| 203 | 81.87 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 12 | 1 |
| 204 | 81.88 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 12 | 1 |
| 208 | 81.89 | humidity | 70.0 | 30 | < th | dose independent | rect. | 12 | 1 |
| 299 | 82.05 | temperature | 25.0 | 30 | > th | dose independent | rect. | 12 | 1 |
| 344 | 82.08 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 12 | 1 |
| 365 | 82.14 | temperature | 30.0 | 30 | < th | dose independent | rect. | 12 | 1 |
| 367 | 82.18 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 12 | 1 |
| 407 | 82.25 | humidity | 90.0 | 30 | < th | dose dependent | rect. | 12 | 1 |
| 455 | 82.36 | wind | 9.0 | 30 | < th | dose dependent | rect. | 12 | 1 |
| 626 | 83.02 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 13 | 20 |
| 635 | 83.12 | humidity | 80.0 | 10 | > th | dose dependent | rect. | 23 | 1 |
| 671 | 83.15 | radiation | 10.0 | 720 | < th | dose dependent | rect. | 17 | 8 |
| 672 | 83.15 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 13 | 23 |
| 675 | 83.18 | humidity | 50.0 | 1440 | < th | dose dependent | rect. | 14 | 1 |
| 753 | 83.41 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 23 | 1 |
| 756 | 83.42 | wind | 9.0 | 30 | < th | dose independent | rect. | 13 | 23 |
| 788 | 83.53 | humidity | 50.0 | 720 | < th | dose independent | rect. | 11 | 4 |
| 795 | 83.54 | humidity | 50.0 | 1440 | < th | dose independent | rect. | 14 | 1 |
| 824 | 83.57 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 18 | 6 |
| 825 | 83.57 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 13 | 16 |
| 846 | 83.61 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 23 | 15 |
| 873 | 83.63 | wind | 5.0 | 10 | < th | dose dependent | rect. | 23 | 1 |
| 877 | 83.64 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 9 | 15 |
| 901 | 83.66 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 13 | 23 |
| 902 | 83.66 | wind | 5.0 | 270 | < th | dose dependent | rect. | 19 | 5 |
| 938 | 83.71 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 23 | 1 |
| 980 | 83.75 | radiation | 10.0 | 720 | < th | dose independent | rect. | 16 | 9 |
| 987 | 83.76 | radiation | 10.0 | 720 | > th | dose dependent | rect. | 17 | 13 |
| 990 | 83.77 | radiation | 10.0 | 720 | > th | dose dependent | rect. | 17 | 1 |