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Os08g0445700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : HAD-superfamily hydrolase subfamily IIB protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.8 (0.0272) R2 : 0.838
β1 : 1.06 (0.0991) R2dD : 0.0427 R2D : 0.029
β2 : 2.11 (0.0834) R2dC : 0.375 R2C : 0.631
β3 : -1.87 (0.13) R2dE : 0.121 R2E : 0.383
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.659 (0.0578) R2dN8 : 0.0616 R2N8 : 0.0226
σ : 0.506
deviance : 118.06
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C
peak time of C : 22.6
E
wheather : humidity
threshold : 105.4
memory length : 8
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 20.4
open length of G : 20.5

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
117.6 0.51 7.8 1.06 2.1 -1.86 0.169 0.968 0.647 22.5 100.2 10 20.3 20.5
118.65 0.507 7.81 1.05 2.1 -1.83 0.0458 -- 0.651 22.5 101.6 9 20.2 20.7
117.04 0.504 7.8 1.06 2.1 -1.88 -- 0.842 0.659 22.7 105.3 8 20.4 20.5
118.06 0.506 7.8 1.06 2.11 -1.87 -- -- 0.659 22.6 105.4 8 20.4 20.5
284.56 0.79 7.74 1.02 -- -3.97 -- 0.926 0.664 -- 103.4 5 20.3 20.7
170.08 0.611 7.82 1.11 2.85 -- -0.0347 -- 0.608 22.8 -- -- -- --
170.08 0.611 7.82 1.11 2.85 -- -- -- 0.608 22.8 -- -- -- --
280.48 0.78 7.74 1.01 -- -3.95 -- -- 0.7 -- 103.1 5 20.2 20.7
147.9 0.566 7.82 -- 2.11 -1.9 -- -- 0.539 22.8 109.2 8 20.3 20.6
673.56 1.21 7.75 1.17 -- -- -- -- 0.627 -- -- -- -- --
202.67 0.666 7.85 -- 2.86 -- -- -- 0.485 22.9 -- -- -- --
227.49 0.702 7.79 -- -- -3.55 -- -- 0.636 -- 113.1 4 0.26 16.7
709.77 1.24 7.78 -- -- -- -- -- 0.497 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 123.46 humidity 90.0 10 < th dose dependent rect. 20 20
2 123.66 humidity 80.0 30 < th dose independent rect. 9 7
3 124.12 humidity 50.0 270 > th dose dependent rect. 23 10
5 124.60 humidity 50.0 10 > th dose dependent rect. 3 17
7 124.90 radiation 20.0 10 < th dose dependent rect. 7 13
13 125.36 humidity 80.0 90 < th dose independent rect. 3 13
16 125.57 radiation 20.0 10 < th dose dependent rect. 10 10
17 125.65 radiation 40.0 10 < th dose dependent rect. 12 8
20 125.67 humidity 80.0 90 < th dose independent rect. 1 15
21 125.70 humidity 80.0 90 < th dose independent rect. 5 11
26 125.76 humidity 90.0 270 < th dose dependent rect. 19 19
29 125.80 humidity 80.0 90 < th dose independent rect. 23 17
38 126.09 humidity 80.0 270 > th dose independent rect. 24 18
41 126.22 humidity 80.0 90 < th dose independent rect. 7 9
46 126.31 humidity 90.0 10 < th dose dependent rect. 9 7
53 126.44 humidity 70.0 270 > th dose dependent rect. 24 18
88 127.41 humidity 90.0 10 < th dose dependent rect. 2 14
94 127.45 humidity 70.0 10 > th dose independent rect. 3 17
106 127.69 radiation 40.0 90 < th dose dependent rect. 15 18
123 127.88 humidity 70.0 30 > th dose dependent sin 1 NA
129 127.98 radiation 40.0 90 < th dose dependent rect. 13 20
151 128.48 humidity 70.0 270 > th dose dependent sin 6 NA
152 128.51 humidity 90.0 10 < th dose dependent rect. 7 9
156 128.57 radiation 30.0 30 < th dose dependent rect. 3 17
172 128.79 precipitation 0.1 270 < th dose independent rect. 17 22
175 128.79 precipitation 0.1 270 < th dose dependent rect. 17 22
212 129.29 radiation 10.0 10 < th dose dependent sin 23 NA
215 129.31 radiation 20.0 30 < th dose independent rect. 12 8
216 129.32 radiation 1.0 270 > th dose independent rect. 7 7
304 130.31 humidity 80.0 270 > th dose independent rect. 24 8
336 130.66 precipitation 0.1 270 < th dose independent rect. 19 18
339 130.66 precipitation 0.1 270 < th dose dependent rect. 19 18
360 130.81 radiation 20.0 30 < th dose independent rect. 3 17
382 131.03 humidity 50.0 10 > th dose dependent rect. 5 15
393 131.11 radiation 10.0 90 > th dose independent rect. 9 7
410 131.27 radiation 1.0 270 > th dose independent rect. 4 10
430 131.34 humidity 80.0 270 < th dose independent rect. 9 4
447 131.51 temperature 15.0 270 > th dose independent rect. 19 18
479 131.72 humidity 80.0 90 < th dose independent sin 3 NA
501 131.93 humidity 80.0 270 > th dose independent sin 5 NA
515 131.98 radiation 1.0 270 > th dose independent rect. 17 22
537 132.13 humidity 90.0 10 < th dose dependent sin 2 NA
552 132.20 radiation 10.0 10 > th dose independent rect. 9 8
591 132.42 wind 9.0 270 < th dose independent rect. 19 18
615 132.53 temperature 10.0 270 > th dose independent rect. 13 6
617 132.53 atmosphere 1010.0 270 < th dose independent rect. 13 6
621 132.53 atmosphere 995.0 270 > th dose independent rect. 19 18
633 132.59 precipitation 0.1 270 < th dose independent rect. 8 15
635 132.59 precipitation 0.1 270 < th dose dependent rect. 8 15
657 132.67 humidity 80.0 270 < th dose independent sin 5 NA
703 132.98 wind 9.0 270 < th dose independent rect. 13 6
773 133.27 radiation 30.0 270 < th dose independent rect. 15 2
782 133.30 radiation 1.0 90 < th dose independent rect. 6 13
795 133.37 atmosphere 1015.0 270 < th dose independent rect. 14 17
798 133.38 atmosphere 995.0 270 > th dose independent rect. 13 6
803 133.41 precipitation 0.1 270 < th dose independent rect. 7 7
805 133.41 precipitation 0.1 270 < th dose dependent rect. 7 7
807 133.42 humidity 90.0 270 < th dose dependent sin 7 NA
820 133.48 radiation 30.0 270 < th dose independent rect. 23 9
830 133.51 wind 1.0 270 > th dose independent rect. 13 6
842 133.55 radiation 40.0 270 < th dose independent rect. 14 17
852 133.60 atmosphere 1015.0 270 < th dose independent rect. 23 9
870 133.64 temperature 10.0 270 > th dose dependent rect. 24 8
893 133.78 radiation 10.0 10 < th dose independent rect. 7 13
907 133.87 radiation 20.0 30 < th dose independent rect. 5 15
909 133.90 radiation 1.0 30 > th dose independent sin 23 NA
976 134.07 temperature 10.0 270 > th dose independent rect. 7 7
977 134.07 atmosphere 995.0 270 > th dose independent rect. 7 7
978 134.07 atmosphere 1015.0 270 < th dose independent rect. 7 7
980 134.07 temperature 10.0 270 > th dose independent rect. 14 17
992 134.12 wind 9.0 270 < th dose independent rect. 7 7
997 134.13 radiation 10.0 10 > th dose independent sin 21 NA