Os08g0445400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os08g0445400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 37.14 | 0.286 | 10.1 | -0.537 | 1.07 | 0.749 | -0.0503 | -0.491 | 0.0866 | 0.803 | 4.962 | 55 | -- | -- |
| 37.65 | 0.286 | 10.1 | -0.548 | 1.1 | 0.705 | -0.382 | -- | 0.0866 | 0.565 | 4.588 | 64 | -- | -- |
| 37.11 | 0.284 | 10.1 | -0.53 | 1.06 | 0.753 | -- | -0.527 | 0.0854 | 0.791 | 4.35 | 58 | -- | -- |
| 38.72 | 0.29 | 10.1 | -0.531 | 1.05 | 0.763 | -- | -- | 0.0835 | 0.705 | 3.907 | 64 | -- | -- |
| 46.25 | 0.317 | 10.1 | -0.468 | -- | 1.52 | -- | -0.592 | 0.152 | -- | 3.471 | 89 | -- | -- |
| 46.61 | 0.32 | 10.1 | -0.566 | 1.93 | -- | -0.58 | -- | 0.0264 | 0.494 | -- | -- | -- | -- |
| 48.06 | 0.325 | 10.1 | -0.544 | 1.93 | -- | -- | -- | 0.0292 | 0.508 | -- | -- | -- | -- |
| 48.07 | 0.323 | 10.1 | -0.49 | -- | 1.54 | -- | -- | 0.149 | -- | 3.406 | 94 | -- | -- |
| 46 | 0.316 | 10.1 | -- | 1.02 | 0.772 | -- | -- | 0.139 | 0.642 | 3.068 | 68 | -- | -- |
| 282.65 | 0.786 | 10.1 | -0.477 | -- | -- | -- | -- | 0.0616 | -- | -- | -- | -- | -- |
| 55.85 | 0.35 | 10.1 | -- | 1.93 | -- | -- | -- | 0.0897 | 0.494 | -- | -- | -- | -- |
| 54.3 | 0.343 | 10 | -- | -- | 1.54 | -- | -- | 0.201 | -- | 3.053 | 99 | -- | -- |
| 288.64 | 0.793 | 10.1 | -- | -- | -- | -- | -- | 0.115 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 35.84 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 11 | 18 |
| 6 | 36.52 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 7 | 22 |
| 10 | 36.75 | humidity | 70.0 | 90 | > th | dose independent | rect. | 13 | 16 |
| 11 | 36.79 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 9 | 20 |
| 16 | 36.90 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 11 | 18 |
| 38 | 37.47 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 17 | 12 |
| 52 | 37.61 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 8 | 22 |
| 53 | 37.63 | radiation | 1.0 | 90 | < th | dose independent | rect. | 20 | 23 |
| 57 | 37.76 | humidity | 70.0 | 90 | > th | dose independent | rect. | 15 | 14 |
| 66 | 37.86 | humidity | 60.0 | 720 | > th | dose independent | rect. | 7 | 6 |
| 81 | 38.03 | radiation | 1.0 | 90 | < th | dose independent | rect. | 6 | 23 |
| 95 | 38.13 | radiation | 1.0 | 90 | < th | dose independent | rect. | 15 | 23 |
| 96 | 38.14 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 20 | 23 |
| 99 | 38.16 | radiation | 1.0 | 90 | > th | dose independent | no | NA | NA |
| 100 | 38.16 | radiation | 1.0 | 90 | < th | dose independent | no | NA | NA |
| 101 | 38.16 | radiation | 1.0 | 90 | > th | dose independent | rect. | 4 | 15 |
| 137 | 38.16 | radiation | 1.0 | 90 | < th | dose independent | rect. | 10 | 22 |
| 138 | 38.16 | radiation | 1.0 | 90 | < th | dose independent | rect. | 13 | 22 |
| 162 | 38.18 | radiation | 1.0 | 90 | < th | dose independent | rect. | 12 | 20 |
| 192 | 38.25 | radiation | 30.0 | 270 | < th | dose dependent | rect. | 15 | 13 |
| 197 | 38.28 | radiation | 10.0 | 30 | < th | dose dependent | sin | 9 | NA |
| 212 | 38.33 | radiation | 1.0 | 90 | < th | dose independent | rect. | 15 | 20 |
| 218 | 38.35 | radiation | 1.0 | 90 | < th | dose independent | rect. | 15 | 17 |
| 225 | 38.36 | humidity | 60.0 | 720 | > th | dose independent | rect. | 24 | 13 |
| 229 | 38.37 | radiation | 40.0 | 30 | < th | dose dependent | sin | 10 | NA |
| 238 | 38.41 | radiation | 1.0 | 90 | < th | dose independent | rect. | 13 | 16 |
| 246 | 38.43 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 1 | 17 |
| 269 | 38.50 | radiation | 10.0 | 30 | < th | dose dependent | no | NA | NA |
| 271 | 38.50 | radiation | 10.0 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 275 | 38.51 | radiation | 10.0 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 279 | 38.52 | radiation | 10.0 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 280 | 38.53 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 4 | 23 |
| 281 | 38.53 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 4 | 23 |
| 285 | 38.55 | humidity | 70.0 | 90 | > th | dose independent | rect. | 17 | 12 |
| 286 | 38.55 | radiation | 1.0 | 90 | < th | dose independent | rect. | 15 | 14 |
| 287 | 38.55 | temperature | 30.0 | 90 | < th | dose independent | rect. | 12 | 17 |
| 290 | 38.56 | radiation | 1.0 | 90 | > th | dose independent | rect. | 15 | 23 |
| 324 | 38.61 | radiation | 1.0 | 90 | < th | dose independent | rect. | 1 | 17 |
| 339 | 38.63 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 13 | 19 |
| 352 | 38.68 | radiation | 10.0 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 356 | 38.70 | radiation | 1.0 | 30 | > th | dose independent | sin | 3 | NA |
| 454 | 38.77 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 15 | 20 |
| 462 | 38.79 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 15 | 17 |
| 465 | 38.80 | temperature | 30.0 | 90 | < th | dose independent | rect. | 17 | 12 |
| 473 | 38.81 | temperature | 30.0 | 270 | < th | dose independent | rect. | 10 | 18 |
| 476 | 38.81 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 5 | 20 |
| 481 | 38.81 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 5 | 20 |
| 486 | 38.83 | radiation | 1.0 | 90 | > th | dose independent | sin | 9 | NA |
| 494 | 38.84 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 13 | 11 |
| 495 | 38.84 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 13 | 11 |
| 506 | 38.88 | radiation | 1.0 | 30 | < th | dose dependent | sin | 2 | NA |
| 509 | 38.89 | radiation | 1.0 | 90 | < th | dose independent | sin | 9 | NA |
| 586 | 39.00 | radiation | 1.0 | 90 | > th | dose independent | rect. | 13 | 23 |
| 617 | 39.06 | temperature | 20.0 | 90 | > th | dose independent | rect. | 3 | 1 |
| 629 | 39.08 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 13 | 17 |
| 647 | 39.12 | radiation | 1.0 | 30 | > th | dose dependent | sin | 11 | NA |
| 684 | 39.19 | radiation | 1.0 | 30 | < th | dose independent | sin | 2 | NA |
| 701 | 39.21 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 2 | 23 |
| 710 | 39.21 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 2 | 23 |
| 768 | 39.30 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 3 | 1 |
| 769 | 39.30 | radiation | 30.0 | 720 | < th | dose dependent | rect. | 16 | 3 |
| 775 | 39.32 | radiation | 1.0 | 90 | < th | dose independent | rect. | 23 | 23 |
| 801 | 39.36 | temperature | 30.0 | 270 | < th | dose independent | rect. | 15 | 13 |
| 812 | 39.37 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 7 | 6 |
| 845 | 39.43 | radiation | 20.0 | 720 | < th | dose independent | rect. | 16 | 3 |
| 875 | 39.49 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 923 | 39.57 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 1 | 10 |
| 933 | 39.58 | humidity | 60.0 | 90 | > th | dose dependent | rect. | 1 | 4 |
| 946 | 39.59 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 1 | 7 |
| 970 | 39.61 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 9 | 10 |
| 980 | 39.62 | humidity | 70.0 | 90 | > th | dose dependent | rect. | 3 | 1 |
| 983 | 39.62 | humidity | 70.0 | 10 | > th | dose dependent | rect. | 1 | 19 |