Os08g0444400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os08g0444400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 297.48 | 0.81 | 8.08 | 2.6 | 4.13 | -1.69 | 0.116 | -0.941 | 0.162 | 8.93 | 58.97 | 4 | -- | -- |
| 299.28 | 0.806 | 8.07 | 2.55 | 4.12 | -1.76 | 0.447 | -- | 0.171 | 8.93 | 57.01 | 2 | -- | -- |
| 297.52 | 0.803 | 8.08 | 2.6 | 4.13 | -1.69 | -- | -0.99 | 0.164 | 8.93 | 58.77 | 4 | -- | -- |
| 300.01 | 0.807 | 8.07 | 2.57 | 4.12 | -1.76 | -- | -- | 0.167 | 8.93 | 57.32 | 2 | -- | -- |
| 1236.38 | 1.64 | 8.2 | 2.63 | -- | -2.41 | -- | -0.593 | 0.131 | -- | 62.55 | 2 | -- | -- |
| 355.15 | 0.883 | 8.06 | 2.54 | 4.46 | -- | 0.725 | -- | 0.233 | 9.97 | -- | -- | -- | -- |
| 357.19 | 0.885 | 8.05 | 2.57 | 4.46 | -- | -- | -- | 0.234 | 9.96 | -- | -- | -- | -- |
| 1237.48 | 1.64 | 8.2 | 2.61 | -- | -2.43 | -- | -- | 0.131 | -- | 62.23 | 2 | -- | -- |
| 474.34 | 1.01 | 8.14 | -- | 4.13 | -1.76 | -- | -- | -0.117 | 8.89 | 56.75 | 3 | -- | -- |
| 1551.13 | 1.84 | 8.17 | 2.52 | -- | -- | -- | -- | 0.233 | -- | -- | -- | -- | -- |
| 531.07 | 1.08 | 8.12 | -- | 4.45 | -- | -- | -- | -0.0517 | 9.92 | -- | -- | -- | -- |
| 1416.13 | 1.76 | 8.26 | -- | -- | -2.43 | -- | -- | -0.151 | -- | 61 | 2 | -- | -- |
| 1718.07 | 1.93 | 8.24 | -- | -- | -- | -- | -- | -0.0465 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 294.68 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 2 | 294.77 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 11 | 23 |
| 3 | 295.78 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 5 | 20 |
| 5 | 296.28 | temperature | 20.0 | 10 | > th | dose dependent | sin | 1 | NA |
| 31 | 299.27 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 20 | 23 |
| 32 | 299.54 | humidity | 60.0 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 33 | 299.59 | humidity | 60.0 | 10 | > th | dose dependent | no | NA | NA |
| 37 | 299.74 | humidity | 60.0 | 10 | > th | dose dependent | rect. | 19 | 23 |
| 41 | 299.96 | temperature | 25.0 | 10 | > th | dose dependent | no | NA | NA |
| 43 | 299.97 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 47 | 300.02 | humidity | 60.0 | 10 | > th | dose dependent | rect. | 9 | 23 |
| 48 | 300.03 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 49 | 300.03 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 62 | 300.58 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 22 | 23 |
| 64 | 300.73 | humidity | 60.0 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 65 | 300.85 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 2 | 16 |
| 67 | 300.89 | humidity | 60.0 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 75 | 301.22 | temperature | 30.0 | 10 | < th | dose dependent | sin | 1 | NA |
| 82 | 301.40 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 6 | 22 |
| 132 | 302.39 | humidity | 90.0 | 10 | < th | dose dependent | no | NA | NA |
| 136 | 302.44 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 144 | 302.60 | temperature | 25.0 | 10 | > th | dose dependent | sin | 7 | NA |
| 159 | 302.83 | humidity | 60.0 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 162 | 302.95 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 164 | 302.98 | humidity | 60.0 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 177 | 303.24 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 20 | 23 |
| 181 | 303.28 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 182 | 303.29 | radiation | 10.0 | 1440 | > th | dose independent | sin | 8 | NA |
| 203 | 303.50 | temperature | 25.0 | 10 | > th | dose independent | rect. | 5 | 21 |
| 217 | 303.70 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 5 | 14 |
| 234 | 303.89 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 6 | 7 |
| 253 | 303.95 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 303 | 304.60 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 17 | 21 |
| 305 | 304.61 | humidity | 60.0 | 10 | > th | dose dependent | rect. | 11 | 21 |
| 307 | 304.62 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 9 | 23 |
| 321 | 304.77 | humidity | 60.0 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 481 | 306.77 | humidity | 60.0 | 10 | > th | dose dependent | rect. | 7 | 23 |
| 547 | 307.42 | temperature | 25.0 | 10 | < th | dose independent | rect. | 24 | 22 |
| 548 | 307.42 | temperature | 25.0 | 30 | > th | dose independent | rect. | 20 | 23 |
| 574 | 307.70 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 606 | 308.01 | humidity | 80.0 | 10 | > th | dose dependent | sin | 0 | NA |
| 613 | 308.04 | temperature | 25.0 | 30 | < th | dose independent | rect. | 5 | 23 |
| 631 | 308.34 | humidity | 80.0 | 10 | > th | dose independent | rect. | 1 | 15 |
| 644 | 308.47 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 6 | 4 |
| 645 | 308.48 | humidity | 60.0 | 10 | > th | dose dependent | sin | 1 | NA |
| 702 | 308.90 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 2 | 16 |
| 722 | 309.12 | temperature | 25.0 | 30 | > th | dose independent | rect. | 15 | 23 |
| 741 | 309.30 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 7 | 2 |
| 775 | 309.71 | temperature | 25.0 | 10 | < th | dose independent | sin | 1 | NA |
| 794 | 309.86 | temperature | 25.0 | 10 | > th | dose independent | rect. | 17 | 23 |
| 795 | 309.87 | humidity | 60.0 | 10 | > th | dose dependent | rect. | 1 | 16 |
| 817 | 310.11 | temperature | 25.0 | 30 | > th | dose independent | no | NA | NA |
| 851 | 310.32 | temperature | 25.0 | 10 | < th | dose independent | rect. | 11 | 23 |
| 887 | 310.47 | temperature | 25.0 | 10 | < th | dose independent | rect. | 21 | 23 |
| 888 | 310.48 | temperature | 25.0 | 10 | < th | dose independent | no | NA | NA |
| 899 | 310.55 | temperature | 25.0 | 10 | < th | dose independent | rect. | 13 | 23 |
| 908 | 310.63 | temperature | 25.0 | 10 | < th | dose independent | rect. | 17 | 23 |
| 909 | 310.63 | temperature | 25.0 | 10 | < th | dose independent | rect. | 19 | 23 |
| 914 | 310.66 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 17 | 19 |
| 924 | 310.74 | temperature | 25.0 | 30 | > th | dose independent | rect. | 22 | 23 |
| 934 | 310.83 | temperature | 25.0 | 10 | < th | dose independent | rect. | 15 | 23 |
| 940 | 310.86 | humidity | 70.0 | 10 | > th | dose dependent | rect. | 21 | 21 |
| 943 | 310.90 | temperature | 25.0 | 10 | > th | dose independent | sin | 2 | NA |
| 960 | 311.05 | temperature | 25.0 | 10 | < th | dose independent | rect. | 2 | 16 |
| 975 | 311.14 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 5 | 23 |
| 990 | 311.20 | temperature | 25.0 | 10 | < th | dose independent | rect. | 9 | 23 |
| 991 | 311.20 | humidity | 80.0 | 10 | > th | dose independent | rect. | 21 | 23 |
| 994 | 311.22 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 5 | 9 |