Os08g0442700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to SERK1 (Fragment).
FiT-DB / Search/ Help/ Sample detail
|
Os08g0442700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to SERK1 (Fragment).
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 162.19 | 0.598 | 4.77 | -0.902 | 1.41 | 0.464 | 1.81 | 2.04 | 0.177 | 0.0224 | 1006 | 4792 | -- | -- |
| 168.35 | 0.604 | 4.77 | -0.797 | 1.39 | 0.565 | 1.77 | -- | 0.133 | 0.0433 | 1006 | 4392 | -- | -- |
| 176.15 | 0.618 | 4.77 | -0.967 | 1.4 | 0.467 | -- | 2.02 | 0.176 | 23.9 | 1006 | 4893 | -- | -- |
| 181.64 | 0.632 | 4.76 | -0.956 | 1.4 | 0.345 | -- | -- | 0.116 | 23.7 | 1006 | 4893 | -- | -- |
| 298.34 | 0.804 | 4.75 | -0.909 | -- | 0.6 | -- | 1.68 | 0.164 | -- | 1006 | 4872 | -- | -- |
| 178.31 | 0.626 | 4.72 | -0.889 | 1.42 | -- | 1.76 | -- | 0.273 | 0.0386 | -- | -- | -- | -- |
| 191.71 | 0.648 | 4.73 | -0.958 | 1.41 | -- | -- | -- | 0.266 | 23.9 | -- | -- | -- | -- |
| 302.9 | 0.811 | 4.74 | -0.82 | -- | 0.691 | -- | -- | 0.144 | -- | 1006 | 4875 | -- | -- |
| 201.77 | 0.662 | 4.74 | -- | 1.4 | 0.579 | -- | -- | 0.214 | 23.8 | 1006 | 3208 | -- | -- |
| 316.71 | 0.832 | 4.7 | -0.915 | -- | -- | -- | -- | 0.285 | -- | -- | -- | -- | -- |
| 215.89 | 0.687 | 4.71 | -- | 1.4 | -- | -- | -- | 0.372 | 23.9 | -- | -- | -- | -- |
| 320.23 | 0.833 | 4.71 | -- | -- | 0.786 | -- | -- | 0.222 | -- | 1006 | 4867 | -- | -- |
| 338.78 | 0.859 | 4.68 | -- | -- | -- | -- | -- | 0.386 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 152.78 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 23 | 1 |
| 2 | 153.49 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 22 | 4 |
| 4 | 153.99 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 23 | 4 |
| 8 | 154.21 | wind | 9.0 | 14400 | < th | dose dependent | rect. | 22 | 5 |
| 9 | 154.22 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 23 | 1 |
| 13 | 154.29 | wind | 3.0 | 14400 | < th | dose independent | rect. | 22 | 4 |
| 21 | 154.86 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 1 | 2 |
| 23 | 154.90 | wind | 9.0 | 14400 | < th | dose dependent | rect. | 23 | 1 |
| 27 | 154.95 | wind | 3.0 | 14400 | > th | dose independent | rect. | 22 | 4 |
| 32 | 155.12 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 21 | 10 |
| 36 | 155.27 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 37 | 155.27 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 38 | 155.30 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 45 | 155.49 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 8 | 1 |
| 114 | 157.30 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 119 | 157.39 | wind | 1.0 | 14400 | > th | dose independent | rect. | 20 | 11 |
| 121 | 157.42 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 122 | 157.42 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 7 | 1 |
| 124 | 157.46 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 5 | 2 |
| 129 | 157.53 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 1 | 1 |
| 135 | 157.58 | wind | 1.0 | 14400 | < th | dose independent | rect. | 20 | 11 |
| 136 | 157.58 | wind | 3.0 | 14400 | < th | dose dependent | sin | 10 | NA |
| 154 | 157.88 | wind | 3.0 | 14400 | < th | dose independent | rect. | 1 | 1 |
| 167 | 158.00 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 22 | 9 |
| 202 | 158.42 | wind | 3.0 | 14400 | < th | dose independent | rect. | 22 | 11 |
| 219 | 158.51 | wind | 3.0 | 14400 | < th | dose independent | rect. | 22 | 9 |
| 290 | 159.20 | wind | 3.0 | 14400 | > th | dose independent | rect. | 6 | 3 |
| 292 | 159.21 | atmosphere | 1005.0 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 315 | 159.41 | wind | 1.0 | 14400 | < th | dose independent | rect. | 4 | 4 |
| 319 | 159.44 | atmosphere | 1005.0 | 4320 | > th | dose independent | rect. | 21 | 3 |
| 330 | 159.50 | wind | 1.0 | 14400 | > th | dose independent | sin | 10 | NA |
| 335 | 159.53 | wind | 1.0 | 14400 | < th | dose independent | rect. | 1 | 7 |
| 344 | 159.56 | wind | 1.0 | 14400 | > th | dose independent | rect. | 1 | 7 |
| 364 | 159.63 | wind | 1.0 | 14400 | < th | dose independent | sin | 10 | NA |
| 391 | 159.78 | wind | 3.0 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 461 | 160.15 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 463 | 160.15 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 479 | 160.24 | atmosphere | 1005.0 | 4320 | < th | dose independent | rect. | 21 | 3 |
| 483 | 160.25 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 492 | 160.29 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 22 | 1 |
| 510 | 160.38 | atmosphere | 1005.0 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 602 | 160.74 | atmosphere | 1005.0 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 613 | 160.76 | atmosphere | 1005.0 | 4320 | > th | dose independent | rect. | 20 | 12 |
| 617 | 160.77 | wind | 1.0 | 14400 | > th | dose independent | rect. | 1 | 10 |
| 627 | 160.82 | wind | 3.0 | 14400 | < th | dose independent | rect. | 8 | 1 |
| 635 | 160.83 | humidity | 90.0 | 4320 | > th | dose independent | rect. | 8 | 1 |
| 666 | 160.95 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 690 | 161.02 | atmosphere | 1005.0 | 4320 | < th | dose independent | rect. | 20 | 12 |
| 692 | 161.02 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 22 | 9 |
| 711 | 161.07 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 15 | 15 |
| 847 | 161.44 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 14 | 16 |
| 861 | 161.48 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 5 | 4 |
| 895 | 161.57 | atmosphere | 1005.0 | 4320 | > th | dose independent | rect. | 20 | 18 |
| 911 | 161.61 | temperature | 25.0 | 270 | > th | dose independent | rect. | 14 | 3 |
| 921 | 161.64 | atmosphere | 1005.0 | 270 | > th | dose independent | rect. | 12 | 21 |
| 979 | 161.78 | atmosphere | 1005.0 | 4320 | > th | dose independent | sin | 10 | NA |
| 981 | 161.78 | humidity | 90.0 | 30 | < th | dose independent | rect. | 1 | 13 |
| 994 | 161.81 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 1000 | 161.81 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 15 | 1 |