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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0442600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.03 (0.0216) R2 : 0.253
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.82 (0.149) R2dE : 0.26 R2E : 0.252
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0347 (0.0466) R2dN8 : 0.00125 R2N8 : -0.00684
σ : 0.405
deviance : 75
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_____
C
peak time of C : --
E
wheather : radiation
threshold : 26.87
memory length : 4325
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 2.74
open length of G : 0.915

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
67.7 0.387 3.02 -0.258 0.1 1.23 0.255 -13.3 -0.0376 11.5 0.5228 4320 2.99 1.01
73.97 0.404 3.03 -0.00927 0.098 1.85 0.323 -- -0.037 12.2 44.67 4320 2.26 1
67.84 0.384 3.02 -0.24 0.102 1.32 -- -14 -0.0398 9.96 0.3576 4320 2.99 1.02
74.35 0.404 3.03 0.00237 0.104 1.85 -- -- -0.0361 10.7 26.87 4325 2.74 0.915
68.45 0.385 3.02 -0.23 -- 1.33 -- -14 -0.0306 -- 0.3376 4320 2.99 1.02
97.87 0.464 3 -0.00652 0.104 -- -0.63 -- 0.0998 4.24 -- -- -- --
98.7 0.465 2.99 0.00051 0.125 -- -- -- 0.103 6.39 -- -- -- --
75 0.405 3.03 0.000364 -- 1.82 -- -- -0.0347 -- 26.87 4325 2.74 0.915
74.35 0.404 3.03 -- 0.103 1.85 -- -- -0.0364 10.7 26.87 4325 2.74 0.915
99.51 0.466 3 0.00375 -- -- -- -- 0.106 -- -- -- -- --
98.7 0.465 2.99 -- 0.125 -- -- -- 0.103 6.39 -- -- -- --
75 0.405 3.03 -- -- 1.82 -- -- -0.0347 -- 26.87 4325 2.74 0.915
99.51 0.466 3 -- -- -- -- -- 0.105 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 67.97 radiation 1.0 4320 < th dose dependent rect. 3 1
2 68.32 atmosphere 1005.0 30 > th dose dependent rect. 2 1
6 68.38 atmosphere 1005.0 30 > th dose independent rect. 2 1
9 68.39 temperature 20.0 30 > th dose dependent rect. 2 1
18 68.41 wind 9.0 1440 < th dose independent rect. 3 1
19 68.41 temperature 10.0 1440 > th dose independent rect. 3 1
22 68.41 temperature 30.0 1440 < th dose independent rect. 3 1
26 68.41 humidity 50.0 1440 > th dose independent rect. 3 1
35 68.41 atmosphere 995.0 1440 > th dose independent rect. 3 1
36 68.41 radiation 1.0 1440 < th dose independent rect. 3 1
56 68.41 temperature 10.0 1440 > th dose independent rect. 4 23
66 68.44 temperature 20.0 30 > th dose independent rect. 2 1
69 68.47 wind 3.0 30 < th dose independent rect. 2 1
71 68.54 wind 5.0 30 < th dose dependent rect. 2 1
74 68.55 wind 9.0 30 < th dose independent rect. 2 1
75 68.55 temperature 10.0 30 > th dose independent rect. 2 1
77 68.55 temperature 30.0 30 < th dose independent rect. 2 1
78 68.55 humidity 50.0 30 > th dose independent rect. 2 1
82 68.55 atmosphere 1010.0 30 < th dose independent rect. 2 1
84 68.55 radiation 1.0 30 < th dose independent rect. 2 1
89 68.55 precipitation 0.1 30 < th dose independent rect. 2 1
90 68.55 temperature 10.0 30 > th dose independent rect. 3 23
91 68.55 radiation 1.0 30 < th dose dependent rect. 2 1
96 68.55 precipitation 0.1 30 < th dose dependent rect. 2 1
101 68.60 humidity 50.0 30 > th dose dependent rect. 2 1
108 68.82 atmosphere 1015.0 30 < th dose dependent rect. 2 1
112 68.99 temperature 30.0 30 < th dose dependent rect. 2 1
115 69.09 atmosphere 995.0 30 > th dose independent rect. 3 23
119 69.13 wind 1.0 30 > th dose independent rect. 2 1
167 70.27 precipitation 0.1 30 < th dose independent rect. 3 23
168 70.27 precipitation 0.1 30 < th dose dependent rect. 3 23
177 71.45 wind 9.0 30 < th dose independent rect. 3 23
193 77.43 humidity 50.0 30 > th dose independent rect. 3 23
218 81.37 temperature 30.0 30 < th dose independent rect. 3 23
259 82.75 temperature 25.0 270 > th dose independent rect. 23 4
260 82.75 atmosphere 1015.0 30 < th dose independent rect. 3 23
268 83.51 temperature 25.0 270 > th dose dependent rect. 23 4
278 84.02 temperature 25.0 270 > th dose dependent rect. 23 1
289 84.47 humidity 90.0 90 < th dose independent rect. 2 1
293 84.66 temperature 25.0 270 > th dose independent rect. 23 1
402 86.91 wind 1.0 30 > th dose independent rect. 3 23
415 87.23 wind 9.0 30 < th dose dependent rect. 3 23
425 87.43 radiation 20.0 30 < th dose dependent rect. 3 23
435 87.68 wind 1.0 30 > th dose dependent rect. 2 1
444 87.94 wind 1.0 10 > th dose independent sin 15 NA
517 89.00 humidity 50.0 30 > th dose dependent rect. 3 23
535 89.24 radiation 10.0 30 < th dose independent rect. 3 23
546 89.41 wind 3.0 10 < th dose dependent rect. 22 5
626 89.98 atmosphere 1015.0 1440 < th dose independent rect. 3 1
736 90.23 temperature 10.0 30 > th dose dependent rect. 3 23
762 90.44 humidity 90.0 270 < th dose independent rect. 23 3
769 90.47 wind 1.0 30 < th dose dependent rect. 10 17
775 90.51 wind 1.0 10 > th dose independent no NA NA
874 90.95 wind 1.0 10 < th dose independent rect. 2 10
919 91.09 wind 1.0 10 > th dose independent rect. 16 17
939 91.20 wind 1.0 10 < th dose independent sin 16 NA
984 91.45 humidity 50.0 720 > th dose independent rect. 3 12
991 91.51 wind 1.0 10 > th dose independent rect. 18 15