Os08g0442000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF566 family protein.
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Os08g0442000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF566 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = precipitation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 19.13 | 0.206 | 2.91 | -0.0363 | 0.0535 | 0.158 | -0.197 | -0.732 | 0.0355 | 7.31 | 0.1049 | 5044 | -- | -- |
| 19.63 | 0.206 | 2.89 | -0.0576 | 0.0533 | 0.0678 | -0.191 | -- | 0.0289 | 6.98 | -1.86e-06 | 4188 | -- | -- |
| 19.23 | 0.204 | 2.91 | -0.067 | 0.0462 | 0.222 | -- | -0.998 | 0.0273 | 7.42 | 0.3282 | 5044 | -- | -- |
| 19.74 | 0.207 | 2.9 | -0.0512 | 0.0513 | 0.0539 | -- | -- | 0.0262 | 7.17 | 0.005373 | 4402 | -- | -- |
| 19.37 | 0.205 | 2.92 | -0.0742 | -- | 0.247 | -- | -1.11 | 0.0343 | -- | 0.3639 | 5044 | -- | -- |
| 19.69 | 0.208 | 2.9 | -0.0351 | 0.0529 | -- | -0.198 | -- | 0.0212 | 7.54 | -- | -- | -- | -- |
| 19.79 | 0.208 | 2.9 | -0.0396 | 0.0527 | -- | -- | -- | 0.0216 | 8.06 | -- | -- | -- | -- |
| 19.88 | 0.208 | 2.9 | -0.0549 | -- | 0.0567 | -- | -- | 0.0273 | -- | -3.635e-05 | 4154 | -- | -- |
| 19.81 | 0.207 | 2.89 | -- | 0.0513 | 0.0433 | -- | -- | 0.0298 | 7.2 | 5.511e-06 | 4410 | -- | -- |
| 19.94 | 0.209 | 2.9 | -0.0391 | -- | -- | -- | -- | 0.0223 | -- | -- | -- | -- | -- |
| 19.83 | 0.208 | 2.89 | -- | 0.0524 | -- | -- | -- | 0.0261 | 8.11 | -- | -- | -- | -- |
| 19.95 | 0.208 | 2.89 | -- | -- | 0.0417 | -- | -- | 0.0323 | -- | -0.0001861 | 4157 | -- | -- |
| 19.98 | 0.209 | 2.9 | -- | -- | -- | -- | -- | 0.0266 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 17.90 | temperature | 20 | 90 | < th | dose independent | rect. | 6 | 2 |
| 5 | 17.91 | temperature | 20 | 90 | < th | dose dependent | rect. | 6 | 1 |
| 13 | 18.04 | radiation | 1 | 90 | < th | dose dependent | rect. | 7 | 1 |
| 23 | 18.16 | wind | 1 | 10 | < th | dose independent | rect. | 6 | 4 |
| 44 | 18.34 | humidity | 70 | 720 | < th | dose dependent | rect. | 8 | 1 |
| 46 | 18.35 | humidity | 60 | 1440 | < th | dose independent | rect. | 8 | 1 |
| 60 | 18.36 | humidity | 60 | 270 | < th | dose independent | rect. | 8 | 1 |
| 108 | 18.36 | wind | 1 | 10 | < th | dose dependent | rect. | 6 | 8 |
| 128 | 18.37 | humidity | 60 | 90 | < th | dose independent | rect. | 18 | 15 |
| 129 | 18.37 | wind | 1 | 10 | < th | dose dependent | rect. | 6 | 4 |
| 131 | 18.37 | wind | 1 | 10 | < th | dose dependent | rect. | 9 | 5 |
| 141 | 18.37 | humidity | 60 | 90 | < th | dose dependent | rect. | 18 | 15 |
| 143 | 18.38 | wind | 1 | 10 | < th | dose independent | rect. | 9 | 1 |
| 144 | 18.38 | humidity | 60 | 10 | < th | dose independent | rect. | 9 | 1 |
| 233 | 18.38 | wind | 1 | 10 | < th | dose dependent | rect. | 9 | 1 |
| 234 | 18.38 | humidity | 60 | 10 | < th | dose dependent | rect. | 9 | 1 |
| 360 | 18.39 | humidity | 90 | 30 | > th | dose dependent | rect. | 7 | 1 |
| 448 | 18.43 | radiation | 40 | 10 | > th | dose dependent | rect. | 9 | 1 |
| 522 | 18.45 | radiation | 30 | 1440 | < th | dose independent | rect. | 22 | 9 |
| 525 | 18.45 | humidity | 60 | 1440 | > th | dose independent | rect. | 22 | 11 |
| 566 | 18.46 | humidity | 60 | 1440 | > th | dose independent | rect. | 24 | 9 |
| 578 | 18.47 | radiation | 1 | 90 | < th | dose independent | rect. | 6 | 1 |
| 719 | 18.55 | radiation | 40 | 10 | > th | dose dependent | sin | 12 | NA |
| 738 | 18.56 | humidity | 70 | 720 | > th | dose independent | rect. | 8 | 1 |
| 768 | 18.59 | humidity | 60 | 1440 | > th | dose independent | rect. | 3 | 6 |
| 772 | 18.60 | wind | 1 | 10 | < th | dose independent | sin | 21 | NA |
| 784 | 18.61 | humidity | 60 | 1440 | > th | dose independent | rect. | 5 | 4 |
| 785 | 18.61 | radiation | 30 | 1440 | < th | dose independent | rect. | 24 | 7 |
| 814 | 18.62 | radiation | 40 | 10 | > th | dose independent | rect. | 9 | 1 |
| 928 | 18.64 | humidity | 90 | 720 | < th | dose independent | rect. | 3 | 1 |
| 957 | 18.66 | humidity | 90 | 720 | < th | dose dependent | rect. | 3 | 1 |
| 993 | 18.68 | temperature | 20 | 270 | < th | dose independent | rect. | 9 | 1 |