Os08g0441100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to PnC401 homologue.
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Os08g0441100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to PnC401 homologue.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 447.65 | 0.994 | 9.22 | 0.715 | 4.22 | -1.85 | 1.53 | 1.45 | -1.62 | 7.39 | 27.71 | 1468 | -- | -- |
| 451.68 | 0.99 | 9.2 | 0.883 | 4.22 | -1.83 | 1.52 | -- | -1.56 | 7.39 | 27.49 | 1473 | -- | -- |
| 454 | 0.992 | 9.22 | 0.754 | 4.22 | -1.85 | -- | 1.4 | -1.62 | 7.39 | 27.41 | 1468 | -- | -- |
| 457.71 | 0.996 | 9.2 | 0.935 | 4.21 | -1.82 | -- | -- | -1.55 | 7.39 | 27.42 | 1477 | -- | -- |
| 1307.13 | 1.69 | 9.2 | 1.36 | -- | -1.53 | -- | 0.316 | -1.03 | -- | 8.85 | 1505 | -- | -- |
| 567.8 | 1.12 | 9.09 | 1.19 | 4.25 | -- | 1.46 | -- | -1.08 | 7.38 | -- | -- | -- | -- |
| 573.59 | 1.12 | 9.09 | 1.22 | 4.25 | -- | -- | -- | -1.08 | 7.39 | -- | -- | -- | -- |
| 1307.74 | 1.69 | 9.2 | 1.36 | -- | -1.53 | -- | -- | -1.03 | -- | 8.85 | 1505 | -- | -- |
| 480.28 | 1.02 | 9.23 | -- | 4.22 | -1.93 | -- | -- | -1.68 | 7.38 | 27.33 | 1473 | -- | -- |
| 1536.27 | 1.83 | 9.19 | 1.29 | -- | -- | -- | -- | -1.01 | -- | -- | -- | -- | -- |
| 612.8 | 1.16 | 9.13 | -- | 4.26 | -- | -- | -- | -1.22 | 7.37 | -- | -- | -- | -- |
| 1356.18 | 1.72 | 9.23 | -- | -- | -1.51 | -- | -- | -1.18 | -- | 8.85 | 1505 | -- | -- |
| 1580.11 | 1.86 | 9.23 | -- | -- | -- | -- | -- | -1.16 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 436.91 | humidity | 80 | 720 | < th | dose dependent | rect. | 19 | 2 |
| 7 | 445.93 | radiation | 20 | 1440 | > th | dose independent | rect. | 9 | 4 |
| 9 | 446.30 | radiation | 30 | 1440 | < th | dose dependent | rect. | 15 | 23 |
| 13 | 447.25 | radiation | 30 | 1440 | < th | dose dependent | sin | 1 | NA |
| 14 | 447.29 | radiation | 30 | 1440 | < th | dose dependent | rect. | 6 | 10 |
| 18 | 447.63 | radiation | 30 | 1440 | < th | dose dependent | rect. | 9 | 4 |
| 22 | 447.79 | radiation | 30 | 1440 | < th | dose dependent | rect. | 6 | 14 |
| 23 | 447.86 | radiation | 30 | 1440 | < th | dose dependent | rect. | 1 | 15 |
| 30 | 447.93 | radiation | 30 | 1440 | < th | dose dependent | rect. | 6 | 22 |
| 46 | 448.09 | radiation | 30 | 1440 | < th | dose dependent | rect. | 19 | 21 |
| 55 | 448.17 | radiation | 30 | 1440 | < th | dose dependent | rect. | 9 | 23 |
| 115 | 448.44 | radiation | 20 | 1440 | < th | dose independent | rect. | 8 | 6 |
| 166 | 448.59 | radiation | 30 | 1440 | < th | dose dependent | no | NA | NA |
| 196 | 448.95 | radiation | 20 | 1440 | < th | dose independent | rect. | 15 | 23 |
| 202 | 449.04 | radiation | 20 | 1440 | < th | dose independent | rect. | 1 | 13 |
| 213 | 449.17 | radiation | 20 | 1440 | < th | dose independent | rect. | 9 | 4 |
| 222 | 449.23 | humidity | 80 | 720 | < th | dose independent | rect. | 19 | 2 |
| 223 | 449.23 | radiation | 20 | 1440 | < th | dose independent | rect. | 18 | 20 |
| 253 | 449.42 | radiation | 20 | 1440 | < th | dose independent | sin | 1 | NA |
| 408 | 450.21 | radiation | 20 | 1440 | < th | dose independent | rect. | 8 | 12 |
| 414 | 450.24 | radiation | 20 | 1440 | < th | dose independent | rect. | 9 | 23 |
| 433 | 450.31 | radiation | 20 | 1440 | < th | dose independent | rect. | 8 | 21 |
| 439 | 450.32 | radiation | 30 | 1440 | < th | dose dependent | rect. | 11 | 23 |
| 446 | 450.36 | radiation | 20 | 1440 | > th | dose independent | sin | 3 | NA |
| 572 | 450.73 | radiation | 20 | 1440 | < th | dose independent | rect. | 1 | 19 |
| 685 | 450.97 | radiation | 20 | 1440 | < th | dose independent | no | NA | NA |
| 744 | 451.14 | humidity | 70 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 768 | 451.33 | humidity | 70 | 1440 | < th | dose independent | rect. | 11 | 21 |
| 780 | 451.46 | humidity | 70 | 1440 | < th | dose independent | rect. | 11 | 9 |
| 813 | 451.71 | radiation | 1 | 1440 | > th | dose dependent | rect. | 15 | 23 |
| 830 | 451.82 | radiation | 1 | 1440 | > th | dose dependent | rect. | 6 | 10 |
| 868 | 452.03 | radiation | 1 | 1440 | > th | dose dependent | sin | 0 | NA |
| 912 | 452.20 | radiation | 1 | 1440 | > th | dose dependent | rect. | 17 | 23 |
| 924 | 452.28 | radiation | 1 | 1440 | > th | dose dependent | rect. | 9 | 23 |
| 993 | 452.50 | radiation | 1 | 1440 | > th | dose dependent | no | NA | NA |