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Os08g0440800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Glyceraldehyde-3-phosphate dehydrogenase.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 15.1 (0.0179) R2 : 0.924
β1 : -- (--) R2dD : -- R2D : --
β2 : 2.58 (0.063) R2dC : 0.51 R2C : 0.811
β3 : -1.44 (0.078) R2dE : 0.109 R2E : 0.416
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.123 (0.0382) R2dN8 : 0.0017 R2N8 : 0.000685
σ : 0.336
deviance : 51.92
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_____
C
peak time of C : 6.52
E
wheather : temperature
threshold : 25.7
memory length : 279
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 12.1
open length of G : 4.97

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
39.32 0.295 15.1 -0.562 2.59 -1.41 1.44 0.359 -0.156 6.55 25.26 285 12.1 4.95
39.39 0.292 15.1 -0.59 2.59 -1.4 1.35 -- -0.165 6.54 25.2 290 12.1 4.97
43.02 0.305 15.1 -0.629 2.55 -1.41 -- -0.809 -0.173 6.54 25.1 300 12 5.05
43.7 0.308 15.1 -0.567 2.58 -1.43 -- -- -0.169 6.54 25.2 286 12.1 4.92
69.17 0.387 15.1 -0.524 -- -2.89 -- -2.24 -0.114 -- 18 386 10.3 9.77
73.22 0.401 15.1 -0.691 3.38 -- 1.51 -- -0.293 6.3 -- -- -- --
78.85 0.416 15.1 -0.673 3.39 -- -- -- -0.299 6.29 -- -- -- --
67.58 0.383 15.2 -0.471 -- -3.23 -- -- -0.105 -- 18.5 438 9.63 9.97
51.92 0.336 15.1 -- 2.58 -1.44 -- -- -0.123 6.52 25.7 279 12.1 4.97
673.73 1.21 15.2 -0.582 -- -- -- -- -0.225 -- -- -- -- --
90.8 0.446 15.1 -- 3.38 -- -- -- -0.224 6.3 -- -- -- --
68.56 0.386 15.1 -- -- -3.3 -- -- -0.141 -- 19.26 453 9.62 9.57
682.68 1.22 15.1 -- -- -- -- -- -0.161 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 39.98 temperature 10.0 270 > th dose dependent rect. 12 5
2 40.10 temperature 25.0 270 > th dose independent rect. 12 5
15 42.91 precipitation 0.1 270 < th dose independent rect. 17 20
17 42.91 precipitation 0.1 270 < th dose dependent rect. 17 20
22 43.16 wind 9.0 270 < th dose independent rect. 13 4
23 43.17 wind 1.0 270 > th dose independent rect. 13 4
24 43.19 temperature 10.0 270 > th dose independent rect. 13 4
26 43.19 atmosphere 1010.0 270 < th dose independent rect. 13 4
28 43.19 temperature 10.0 270 > th dose independent rect. 17 20
31 43.23 precipitation 0.1 270 < th dose independent rect. 13 4
32 43.23 precipitation 0.1 270 < th dose dependent rect. 13 4
41 43.48 humidity 90.0 270 < th dose independent rect. 13 4
43 43.65 radiation 1.0 270 > th dose independent rect. 13 4
45 43.73 atmosphere 995.0 270 > th dose independent rect. 13 4
46 43.74 wind 9.0 270 < th dose independent rect. 17 20
60 44.03 atmosphere 995.0 270 > th dose independent rect. 18 18
63 44.05 humidity 50.0 270 > th dose independent rect. 17 19
72 44.40 temperature 10.0 10 > th dose dependent rect. 14 6
89 44.87 radiation 1.0 270 > th dose independent rect. 12 18
95 45.08 radiation 40.0 270 < th dose independent rect. 22 10
98 45.15 temperature 10.0 270 > th dose independent rect. 22 10
99 45.15 temperature 30.0 270 < th dose independent rect. 22 10
100 45.15 humidity 50.0 270 > th dose independent rect. 22 10
102 45.15 atmosphere 995.0 270 > th dose independent rect. 22 10
103 45.15 temperature 10.0 270 > th dose independent rect. 8 14
104 45.16 wind 9.0 270 < th dose independent rect. 22 10
111 45.35 wind 1.0 270 > th dose dependent rect. 13 4
115 45.43 precipitation 0.1 270 < th dose independent rect. 8 14
117 45.43 precipitation 0.1 270 < th dose dependent rect. 8 14
125 45.59 wind 1.0 270 > th dose independent rect. 17 19
128 45.67 humidity 50.0 270 > th dose independent rect. 13 4
130 45.69 precipitation 0.1 270 < th dose independent rect. 22 10
131 45.69 precipitation 0.1 270 < th dose dependent rect. 22 10
133 45.80 atmosphere 1015.0 270 < th dose independent rect. 18 18
178 46.29 atmosphere 1015.0 270 < th dose independent rect. 8 14
179 46.29 wind 9.0 270 < th dose independent rect. 12 19
180 46.30 temperature 10.0 270 > th dose independent rect. 7 5
181 46.30 atmosphere 995.0 270 > th dose independent rect. 7 5
182 46.30 atmosphere 1015.0 270 < th dose independent rect. 7 5
183 46.30 temperature 10.0 270 > th dose independent rect. 12 19
186 46.33 precipitation 0.1 270 < th dose independent rect. 7 5
187 46.33 precipitation 0.1 270 < th dose dependent rect. 7 5
199 46.42 temperature 30.0 270 < th dose independent rect. 18 18
203 46.44 wind 9.0 270 < th dose independent rect. 8 14
209 46.55 wind 9.0 270 < th dose independent rect. 7 5
215 46.68 radiation 1.0 270 > th dose independent rect. 8 4
216 46.68 humidity 50.0 270 > th dose dependent rect. 22 10
217 46.71 temperature 10.0 270 > th dose dependent rect. 3 14
223 46.83 humidity 50.0 270 > th dose independent rect. 7 5
233 46.92 wind 1.0 270 > th dose independent rect. 7 5
237 46.96 temperature 15.0 10 > th dose independent rect. 20 18
256 47.06 precipitation 0.1 10 < th dose independent rect. 14 6
257 47.06 precipitation 0.1 10 < th dose dependent rect. 14 6
266 47.15 wind 9.0 270 < th dose independent rect. 3 14
271 47.17 atmosphere 995.0 270 > th dose independent rect. 12 19
274 47.18 precipitation 0.1 270 < th dose independent rect. 12 19
275 47.18 precipitation 0.1 270 < th dose dependent rect. 12 19
278 47.20 temperature 10.0 270 > th dose independent rect. 9 2
279 47.20 atmosphere 995.0 270 > th dose independent rect. 9 2
280 47.20 atmosphere 1015.0 270 < th dose independent rect. 9 2
281 47.20 temperature 10.0 270 > th dose independent rect. 11 22
284 47.22 wind 1.0 10 > th dose independent rect. 14 6
292 47.23 radiation 40.0 90 < th dose independent rect. 14 5
295 47.24 precipitation 0.1 270 < th dose independent rect. 9 2
297 47.24 precipitation 0.1 270 < th dose dependent rect. 9 2
300 47.27 temperature 10.0 10 > th dose independent rect. 14 6
302 47.27 atmosphere 1010.0 10 < th dose independent rect. 14 6
305 47.27 atmosphere 995.0 10 > th dose independent rect. 20 18
311 47.29 wind 9.0 270 < th dose independent rect. 11 22
318 47.31 wind 9.0 10 < th dose independent rect. 14 6
319 47.32 temperature 10.0 270 > th dose independent rect. 17 10
320 47.32 radiation 20.0 270 < th dose independent rect. 17 10
323 47.32 temperature 10.0 270 > th dose independent rect. 3 14
324 47.32 atmosphere 1015.0 270 < th dose independent rect. 3 14
332 47.38 wind 9.0 270 < th dose independent rect. 9 2
333 47.38 wind 9.0 270 < th dose independent rect. 17 10
341 47.43 wind 1.0 270 > th dose independent rect. 9 2
344 47.47 humidity 50.0 270 > th dose independent rect. 9 2
347 47.50 radiation 40.0 10 < th dose independent rect. 14 6
368 47.61 radiation 1.0 270 > th dose independent rect. 9 2
381 47.63 atmosphere 1015.0 270 < th dose dependent rect. 13 4
412 47.86 radiation 40.0 270 < th dose dependent rect. 22 10
413 47.87 wind 9.0 10 < th dose independent rect. 20 18
415 47.88 radiation 40.0 270 < th dose dependent rect. 17 10
417 47.92 wind 1.0 10 > th dose dependent rect. 14 6
426 47.98 precipitation 0.1 270 < th dose independent rect. 17 10
427 47.98 precipitation 0.1 270 < th dose dependent rect. 17 10
432 48.01 precipitation 0.1 10 < th dose independent rect. 20 18
433 48.01 precipitation 0.1 10 < th dose dependent rect. 20 18
436 48.03 humidity 50.0 270 > th dose independent rect. 17 10
437 48.03 precipitation 0.1 270 < th dose independent rect. 3 14
438 48.03 precipitation 0.1 270 < th dose dependent rect. 3 14
461 48.10 temperature 10.0 1440 > th dose independent rect. 15 5
466 48.10 temperature 10.0 1440 > th dose independent rect. 20 19
498 48.21 temperature 30.0 270 < th dose independent rect. 8 4
513 48.33 radiation 1.0 270 > th dose dependent rect. 13 18
524 48.39 atmosphere 995.0 10 > th dose independent rect. 14 6
526 48.39 atmosphere 1015.0 10 < th dose independent rect. 20 18
540 48.48 radiation 40.0 90 < th dose independent rect. 14 19
620 48.74 wind 1.0 270 > th dose independent rect. 17 9
624 48.75 radiation 1.0 270 > th dose dependent rect. 13 4
715 49.11 radiation 1.0 10 > th dose independent rect. 9 5
720 49.16 atmosphere 1015.0 270 < th dose independent rect. 23 9
728 49.22 atmosphere 995.0 270 > th dose independent rect. 17 10
741 49.32 radiation 40.0 270 < th dose independent rect. 14 3
743 49.33 temperature 10.0 10 > th dose independent rect. 9 5
745 49.33 atmosphere 995.0 10 > th dose independent rect. 9 5
746 49.33 atmosphere 1015.0 10 < th dose independent rect. 9 5
747 49.33 precipitation 0.1 10 < th dose independent rect. 9 5
748 49.33 temperature 10.0 10 > th dose independent rect. 14 19
749 49.33 precipitation 0.1 10 < th dose dependent rect. 9 5
758 49.38 wind 1.0 270 > th dose independent rect. 8 14
762 49.41 radiation 40.0 10 < th dose independent rect. 14 19
764 49.42 wind 9.0 10 < th dose independent rect. 14 19
812 49.62 temperature 10.0 1440 > th dose independent rect. 10 5
816 49.62 temperature 10.0 1440 > th dose independent rect. 15 19
819 49.63 atmosphere 995.0 270 > th dose independent rect. 3 14
878 49.84 radiation 1.0 270 > th dose dependent rect. 14 2
888 49.91 wind 9.0 10 < th dose independent rect. 9 5
927 49.98 radiation 1.0 270 > th dose dependent sin 14 NA
961 50.09 humidity 90.0 90 < th dose independent rect. 9 5
974 50.15 atmosphere 995.0 270 > th dose dependent rect. 13 4
996 50.25 temperature 10.0 270 > th dose dependent rect. 18 7