Os08g0440500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : MIR domain containing protein.
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Os08g0440500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : MIR domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 46.99 | 0.322 | 11 | 0.709 | 0.133 | 1.26 | 0.276 | 0.372 | 0.243 | 11.6 | 30.47 | 109 | -- | -- |
| 47.12 | 0.32 | 11 | 0.757 | 0.133 | 1.27 | 0.195 | -- | 0.254 | 11.3 | 30.8 | 107 | -- | -- |
| 47.26 | 0.32 | 11 | 0.753 | 0.127 | 1.24 | -- | 0.147 | 0.247 | 11.2 | 30.61 | 108 | -- | -- |
| 47.28 | 0.32 | 11 | 0.775 | 0.126 | 1.25 | -- | -- | 0.254 | 11.2 | 30.79 | 108 | -- | -- |
| 47.91 | 0.322 | 11 | 0.706 | -- | 1.23 | -- | 0.245 | 0.243 | -- | 30.55 | 159 | -- | -- |
| 67.03 | 0.384 | 11 | 0.478 | 0.355 | -- | 0.0787 | -- | 0.0279 | 4.38 | -- | -- | -- | -- |
| 67.05 | 0.383 | 11 | 0.477 | 0.355 | -- | -- | -- | 0.0275 | 4.35 | -- | -- | -- | -- |
| 47.67 | 0.322 | 11 | 0.75 | -- | 1.18 | -- | -- | 0.241 | -- | 30.68 | 179 | -- | -- |
| 61.44 | 0.367 | 11 | -- | 0.19 | 0.927 | -- | -- | 0.107 | 7.9 | 31.75 | 108 | -- | -- |
| 73.84 | 0.402 | 11 | 0.491 | -- | -- | -- | -- | 0.0369 | -- | -- | -- | -- | -- |
| 73.05 | 0.4 | 11.1 | -- | 0.364 | -- | -- | -- | -0.0256 | 4.32 | -- | -- | -- | -- |
| 62.1 | 0.367 | 11 | -- | -- | 1 | -- | -- | 0.105 | -- | 32.37 | 128 | -- | -- |
| 80.2 | 0.418 | 11.1 | -- | -- | -- | -- | -- | -0.0176 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 45.95 | temperature | 15 | 90 | > th | dose dependent | rect. | 6 | 23 |
| 2 | 46.23 | temperature | 30 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 4 | 46.55 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 23 |
| 7 | 46.77 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 8 | 46.81 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 23 |
| 11 | 46.95 | temperature | 30 | 270 | < th | dose dependent | rect. | 22 | 23 |
| 13 | 47.01 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 17 | 47.06 | temperature | 30 | 90 | < th | dose dependent | rect. | 19 | 23 |
| 19 | 47.11 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 30 | 47.36 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 35 | 47.40 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 41 | 47.45 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 47 | 47.56 | temperature | 15 | 270 | > th | dose dependent | rect. | 13 | 23 |
| 51 | 47.61 | temperature | 15 | 90 | > th | dose dependent | rect. | 21 | 23 |
| 52 | 47.63 | temperature | 15 | 90 | > th | dose dependent | no | NA | NA |
| 54 | 47.64 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 59 | 47.70 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 93 | 48.02 | temperature | 30 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 179 | 48.91 | temperature | 20 | 30 | > th | dose dependent | rect. | 23 | 23 |
| 255 | 49.45 | temperature | 20 | 30 | > th | dose dependent | rect. | 23 | 21 |
| 278 | 49.63 | temperature | 20 | 90 | > th | dose dependent | rect. | 1 | 23 |
| 331 | 49.92 | temperature | 30 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 423 | 50.46 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 18 |
| 502 | 50.79 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 20 |
| 525 | 50.88 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 18 |
| 556 | 50.97 | temperature | 15 | 270 | > th | dose dependent | sin | 8 | NA |
| 587 | 51.04 | temperature | 20 | 10 | > th | dose dependent | rect. | 16 | 23 |
| 598 | 51.08 | temperature | 25 | 30 | < th | dose dependent | sin | 23 | NA |
| 627 | 51.13 | temperature | 30 | 270 | < th | dose dependent | sin | 8 | NA |
| 680 | 51.29 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 2 |
| 772 | 51.52 | temperature | 25 | 1440 | > th | dose independent | rect. | 11 | 14 |
| 773 | 51.52 | temperature | 25 | 1440 | < th | dose independent | rect. | 11 | 15 |
| 865 | 51.72 | temperature | 25 | 1440 | < th | dose independent | sin | 19 | NA |
| 871 | 51.73 | temperature | 25 | 1440 | < th | dose independent | rect. | 11 | 11 |
| 934 | 51.81 | temperature | 25 | 720 | < th | dose dependent | sin | 22 | NA |
| 942 | 51.83 | temperature | 25 | 1440 | > th | dose independent | sin | 19 | NA |
| 992 | 51.90 | temperature | 25 | 1440 | > th | dose independent | rect. | 11 | 10 |